Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GRT08_RS04125 Genome accession   NZ_CP047234
Coordinates   801097..802914 (+) Length   605 a.a.
NCBI ID   WP_071391446.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 796097..807914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS04110 (GRT08_04070) - 796881..797642 (+) 762 WP_007408530.1 MurR/RpiR family transcriptional regulator -
  GRT08_RS04115 (GRT08_04075) - 797659..799245 (+) 1587 WP_015388532.1 alpha-glucoside-specific PTS transporter subunit IIBC -
  GRT08_RS04120 (GRT08_04080) - 799383..801116 (+) 1734 WP_377803035.1 ABC transporter ATP-binding protein -
  GRT08_RS04125 (GRT08_04085) rcrQ 801097..802914 (+) 1818 WP_071391446.1 ABC transporter ATP-binding protein Regulator
  GRT08_RS04130 (GRT08_04090) - 803081..803485 (+) 405 WP_014304646.1 DoxX family protein -
  GRT08_RS04135 (GRT08_04095) - 803502..804359 (+) 858 WP_070081514.1 VOC family protein -
  GRT08_RS04140 (GRT08_04100) cyoE 804736..805683 (+) 948 WP_101562828.1 heme o synthase -
  GRT08_RS04145 (GRT08_04105) - 805721..806272 (-) 552 WP_012117104.1 PadR family transcriptional regulator -
  GRT08_RS04150 (GRT08_04110) - 806506..807108 (+) 603 WP_071391447.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67486.18 Da        Isoelectric Point: 9.5659

>NTDB_id=358303 GRT08_RS04125 WP_071391446.1 801097..802914(+) (rcrQ) [Bacillus amyloliquefaciens strain FJ4]
MEKDIRKPFRYPKIPLKPNEGGRKRAKAKDTKGTLRRIWSYVAEKKGLLTLVIIMVVISAIFGLLGPFVIGKAIDHFIVG
RTTDGLAGVLFILFGIYLVQSLSLWFQNYWMINISQSTVFKMRSELFTHLHELPIPFFDKQRLGDLMSRVTNDIENVSST
LNTSVIQVLSSVITFVGTIAVMLYMSPLLTLITLLIIPIMLLSIKWITNRTGLLFKQQQKNLGELNGFIEESISGAKVIK
AYSREDRVMEQFLEKNAALQSSGFWAQTISGFIPKVMNSLNNLSFTIIAAVGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEEHATHQPIKTGEIEFRDVSFGYQEDSLILKHLSFSVPKGQSIAFVGP
TGAGKTTVTSLIARFYEPNNGKILIDGTDIKKLTRSSLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKAAN
AHGFIERLPKGYDTVLTQNGAGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVKIQEALGRLMAGRTSVIIAHR
LNTIQKADQILVLKDGEMAEKGTHAELLSQNGFYRELYESQFRES

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=358303 GRT08_RS04125 WP_071391446.1 801097..802914(+) (rcrQ) [Bacillus amyloliquefaciens strain FJ4]
GTGGAGAAAGACATTCGTAAACCTTTCCGATATCCGAAAATACCGCTCAAACCAAATGAAGGCGGCAGAAAACGCGCGAA
AGCAAAAGATACAAAAGGCACGCTGCGCAGAATCTGGTCGTATGTAGCCGAGAAAAAAGGGCTTTTAACCCTTGTGATCA
TCATGGTAGTCATAAGCGCCATATTCGGCCTGCTCGGACCGTTCGTCATCGGGAAAGCAATTGATCATTTTATCGTCGGA
CGGACGACGGACGGATTGGCGGGTGTACTGTTCATACTGTTTGGGATTTACCTCGTGCAATCATTGTCCTTATGGTTTCA
AAACTATTGGATGATCAATATCTCGCAAAGCACCGTGTTTAAAATGCGGAGCGAACTGTTCACCCATCTGCATGAGCTGC
CGATACCGTTTTTTGATAAACAGCGCCTCGGCGACTTGATGAGCCGGGTTACCAATGATATCGAAAATGTCAGCTCCACT
TTAAATACATCCGTCATTCAAGTGCTGTCGAGCGTCATTACATTCGTCGGCACAATCGCCGTCATGCTGTACATGAGCCC
GCTTTTAACATTGATCACGCTTTTGATTATTCCGATCATGCTTTTGAGCATTAAATGGATCACCAACCGGACGGGACTCC
TGTTTAAGCAGCAGCAGAAAAACCTCGGCGAGCTGAACGGTTTTATTGAAGAGTCGATATCAGGAGCGAAGGTCATTAAA
GCCTATTCGAGGGAAGACCGCGTCATGGAGCAATTTTTAGAAAAAAACGCGGCGTTACAATCATCAGGGTTTTGGGCGCA
GACAATTTCGGGATTCATTCCGAAAGTCATGAATTCTTTAAACAATTTAAGCTTTACGATTATAGCGGCGGTCGGCGGGC
TGTTTGCGCTGAAGGGGTGGATTTCGATCGGCTCCATCGTCGTATTCGCAGAATACTCGCGGCAGTTCACGCGCCCTTTA
AATGATTTAGCCAATCAGTTCAATACGATGTTATCGGCCATCGCCGGGGCTGAACGGGTGTTTGACGTGCTGGATGAAAA
AGAGGAGCGGGAAGATGAAGAGCATGCGACGCACCAGCCGATCAAAACGGGAGAGATTGAATTCCGAGATGTCTCCTTCG
GCTATCAGGAAGACAGCCTGATCTTAAAACATCTGTCCTTCAGCGTTCCGAAAGGACAGTCAATCGCCTTCGTCGGACCG
ACCGGAGCGGGTAAAACGACCGTTACGAGCCTGATCGCCCGTTTTTACGAGCCGAATAACGGAAAAATCCTCATCGACGG
AACGGACATCAAAAAACTGACGAGATCCAGTCTGAGAAAAAACATGGGGTTTGTCCTGCAGGATTCCTTTCTCTTTCAGG
GCACCATCAGGGAAAATATCCGTTACGGCCGTCTGGATGCATCTGACCAAGAGGTGGAGGCAGCAGCAAAAGCCGCCAAT
GCCCACGGATTCATCGAACGGCTCCCGAAAGGCTACGATACCGTCCTTACCCAAAACGGCGCGGGCATCAGCCAAGGACA
AAAACAGCTTATTTCCATCGCGAGAGCTGTGCTGGCGGACCCGGTGCTGCTCATTTTGGATGAAGCGACGAGCAACATTG
ATACGGTGACGGAAGTGAAAATACAAGAAGCGCTCGGCCGTTTAATGGCGGGCAGAACAAGCGTCATCATCGCTCACAGA
CTGAACACGATTCAAAAAGCCGATCAGATTCTTGTGCTGAAAGACGGCGAAATGGCTGAAAAAGGAACCCATGCCGAACT
GCTCAGCCAGAACGGGTTTTACCGGGAATTATATGAAAGCCAGTTCCGGGAATCATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.593

96.364

0.372