Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   E4T61_RS08365 Genome accession   NZ_CP039297
Coordinates   1647098..1647877 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis isolate UFLA258     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1642098..1652877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T61_RS08345 (E4T61_08345) trmFO 1642785..1644092 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  E4T61_RS08350 (E4T61_08350) xerC 1644162..1645079 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  E4T61_RS08355 (E4T61_08355) hslV 1645095..1645640 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  E4T61_RS08360 (E4T61_08360) hslU 1645657..1647060 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  E4T61_RS08365 (E4T61_08365) codY 1647098..1647877 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  E4T61_RS08370 (E4T61_08370) flgB 1648231..1648620 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  E4T61_RS08375 (E4T61_08375) flgC 1648620..1649072 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  E4T61_RS08380 (E4T61_08380) fliE 1649083..1649403 (+) 321 WP_052827419.1 flagellar hook-basal body complex protein FliE -
  E4T61_RS08385 (E4T61_08385) fliF 1649446..1651056 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  E4T61_RS08390 (E4T61_08390) fliG 1651069..1652085 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  E4T61_RS08395 (E4T61_08395) fliH 1652078..1652833 (+) 756 WP_136396360.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=358010 E4T61_RS08365 WP_003154263.1 1647098..1647877(+) (codY) [Bacillus velezensis isolate UFLA258]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=358010 E4T61_RS08365 WP_003154263.1 1647098..1647877(+) (codY) [Bacillus velezensis isolate UFLA258]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ACCAGCAGATTGAAAATGATCGTATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment