Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GQY29_RS05100 Genome accession   NZ_CP047191
Coordinates   945259..946002 (+) Length   247 a.a.
NCBI ID   WP_011681551.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain EU01     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 940259..951002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQY29_RS05080 (GQY29_05080) dinB 941193..942296 (+) 1104 WP_014608654.1 DNA polymerase IV -
  GQY29_RS05085 (GQY29_05085) - 942594..942827 (+) 234 WP_002947030.1 hypothetical protein -
  GQY29_RS05090 (GQY29_05090) - 943287..944117 (+) 831 WP_014727671.1 transporter substrate-binding domain-containing protein -
  GQY29_RS05095 (GQY29_05095) - 944513..945259 (+) 747 WP_095559509.1 amino acid ABC transporter permease -
  GQY29_RS05100 (GQY29_05100) amiE 945259..946002 (+) 744 WP_011681551.1 amino acid ABC transporter ATP-binding protein Regulator
  GQY29_RS05105 (GQY29_05105) - 946217..946441 (+) 225 WP_002951743.1 DUF4059 family protein -
  GQY29_RS05110 (GQY29_05110) trxB 946507..947427 (+) 921 WP_011226467.1 thioredoxin-disulfide reductase -
  GQY29_RS05115 (GQY29_05115) rsmD 947578..948117 (+) 540 WP_002951741.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GQY29_RS05120 (GQY29_05120) coaD 948151..948648 (+) 498 WP_014621910.1 pantetheine-phosphate adenylyltransferase -
  GQY29_RS05125 (GQY29_05125) sepM 948626..949702 (+) 1077 WP_011681549.1 SepM family pheromone-processing serine protease Regulator
  GQY29_RS05130 (GQY29_05130) - 949787..950731 (+) 945 WP_011226463.1 TIGR01212 family radical SAM protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27661.80 Da        Isoelectric Point: 5.7813

>NTDB_id=357907 GQY29_RS05100 WP_011681551.1 945259..946002(+) (amiE) [Streptococcus thermophilus strain EU01]
MISIKNVTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFGTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDEEATKIAKEELAKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=357907 GQY29_RS05100 WP_011681551.1 945259..946002(+) (amiE) [Streptococcus thermophilus strain EU01]
ATGATTAGTATCAAAAATGTGACCAAGGAATTTTCAGGACAAAAGGTTCTAGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGGAACAATTACCAAGGAGCAAATCCTTACCCTTCGCCGT
AAGTTGGCTATGGTTTTCCAACAGTTTAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTTAAGAT
TGTTAAGAAACTTTCTGACGAAGAAGCTACCAAGATTGCGAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364

Multiple sequence alignment