Detailed information NTG0357556

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: PsalBI1_RS01535
• Genome accession: NZ_CP039234
• Coordinates: 278868..279821 (-)
• Length: 317 a.a.
• NCBI ID: WP_230388980.1
• Uniprot ID: -
• Organism: Piscirickettsia salmonis strain BI1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 273868..284821

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PsalBI1_RS01505 (PsalBI1_00298)	-	274403..274591 (+)	189	WP_282435598.1	transposase	-
PsalBI1_RS01510 (PsalBI1_00299)	-	274588..275004 (+)	417	WP_155085060.1	helix-turn-helix domain-containing protein	-
PsalBI1_RS01515 (PsalBI1_00300)	-	275246..275803 (+)	558	WP_155079478.1	IS630 family transposase	-
PsalBI1_RS26120	-	275817..275948 (+)	132	Protein_292	IS630 family transposase	-
PsalBI1_RS01520 (PsalBI1_00301)	-	276674..276880 (+)	207	WP_155081359.1	hypothetical protein	-
PsalBI1_RS01525 (PsalBI1_00302)	-	276882..277538 (+)	657	WP_155085061.1	hypothetical protein	-
PsalBI1_RS01530 (PsalBI1_00303)	-	277547..278605 (+)	1059	WP_155085062.1	hypothetical protein	-
PsalBI1_RS01535	pilA	278868..279821 (-)	954	WP_230388980.1	signal recognition particle-docking protein FtsY	Machinery gene
PsalBI1_RS25650	-	281473..281601 (+)	129	WP_282434983.1	hypothetical protein	-
PsalBI1_RS25655	-	281737..281862 (-)	126	WP_282434982.1	hypothetical protein	-
PsalBI1_RS01545 (PsalBI1_00305)	-	281892..282329 (+)	438	WP_155081356.1	hypothetical protein	-
PsalBI1_RS01550 (PsalBI1_00306)	-	282571..283788 (+)	1218	WP_155081355.1	YbfB/YjiJ family MFS transporter	-
PsalBI1_RS01555 (PsalBI1_00307)	-	284197..284421 (+)	225	WP_155081103.1	transposase	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 34410.46 Da
• Isoelectric Point: 6.5046

>NTDB_id=357556 PsalBI1_RS01535 WP_230388980.1 278868..279821(-) (pilA) [Piscirickettsia salmonis strain BI1]
MEKSNTNSNNQKKQGLFARLKSGLSKTRENLASGITTLLIGEKKIDDELLEDLETQLLMADVGIDATTHIITDLTKRLDR
NELTDTQKAMEALKENLSGLLDPCNIPLEIPETKDPFVILVIGVNGAGKTTTIGKLAKYYQNQGKSVMLAAGDTFRAAAV
EQLQVWGERNDIPVVAQHTGADSASVIFDAYNSAKAHGCDILIADTAGRLHTQSNLMEELKKVKRVLGKVDNTAPHEVLL
VLDSGTGQNAINQAEQFHQAVNVSGIVMTKLDGTAKGGVIFAIAKKMKLPIRYIGVGEKIDDLRPFKSDEFIKALFG

Nucleotide

• Length: 954 bp

>NTDB_id=357556 PsalBI1_RS01535 WP_230388980.1 278868..279821(-) (pilA) [Piscirickettsia salmonis strain BI1]
ATTGAAAAAAGCAACACCAATAGTAATAACCAGAAAAAGCAAGGCTTATTCGCCCGCTTAAAATCTGGTCTCAGTAAGAC
CCGTGAAAATCTGGCTTCAGGTATTACTACACTTTTAATCGGTGAGAAAAAAATCGATGATGAGCTGCTGGAAGATTTAG
AAACTCAGCTACTCATGGCAGACGTCGGCATTGATGCAACGACCCATATCATTACTGACCTAACCAAGCGTCTTGATCGA
AACGAACTTACAGATACCCAAAAAGCGATGGAAGCGCTCAAAGAAAATTTATCTGGGCTGCTCGATCCATGCAATATTCC
CCTAGAAATTCCAGAAACAAAAGATCCCTTTGTGATTTTAGTCATCGGCGTCAATGGCGCAGGGAAAACTACAACCATTG
GTAAACTTGCCAAGTATTACCAAAACCAAGGCAAAAGCGTCATGCTCGCTGCAGGTGATACCTTCCGTGCCGCCGCGGTT
GAGCAATTACAAGTCTGGGGAGAGCGTAACGATATTCCGGTAGTTGCCCAACATACAGGTGCTGATAGCGCATCAGTAAT
TTTCGATGCGTATAACTCAGCCAAAGCGCATGGTTGTGATATTTTAATTGCCGATACCGCAGGCCGACTGCATACACAAA
GCAACTTAATGGAAGAGCTTAAAAAAGTAAAGCGCGTGCTTGGCAAAGTCGACAATACAGCGCCGCATGAGGTTTTACTA
GTCCTAGACTCAGGCACCGGACAAAACGCTATTAATCAAGCTGAGCAGTTTCATCAGGCTGTCAATGTATCAGGCATTGT
CATGACTAAACTCGATGGCACGGCTAAAGGTGGGGTCATTTTTGCTATCGCTAAGAAAATGAAGTTACCTATCCGTTATA
TTGGCGTCGGCGAAAAAATTGATGATCTACGCCCTTTTAAATCAGATGAATTTATTAAGGCTTTATTTGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (116-316)

• SRP54-type protein, helical bundle domain (SRP54_N) (33-97)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	54.369	97.476	0.53