Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GLX30_RS24055 Genome accession   NZ_CP047140
Coordinates   5439057..5440922 (+) Length   621 a.a.
NCBI ID   WP_208545475.1    Uniprot ID   -
Organism   Streptomyces sp. Tu 2975     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5434057..5445922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLX30_RS24030 (GLX30_24160) - 5434508..5435005 (-) 498 WP_159692227.1 MarR family transcriptional regulator -
  GLX30_RS24035 (GLX30_24165) - 5435040..5435696 (-) 657 WP_159692229.1 class F sortase -
  GLX30_RS24040 (GLX30_24170) - 5435893..5436396 (-) 504 WP_159692231.1 hypothetical protein -
  GLX30_RS24045 (GLX30_24175) - 5436702..5437316 (+) 615 WP_159692233.1 NAD(P)H-dependent oxidoreductase -
  GLX30_RS24050 (GLX30_24180) - 5437327..5439060 (+) 1734 WP_159692235.1 ABC transporter ATP-binding protein -
  GLX30_RS24055 (GLX30_24185) rcrQ 5439057..5440922 (+) 1866 WP_208545475.1 ABC transporter ATP-binding protein Regulator
  GLX30_RS24060 (GLX30_24190) cutA 5441004..5441375 (+) 372 WP_159692237.1 divalent-cation tolerance protein CutA -
  GLX30_RS24065 (GLX30_24195) - 5441372..5441812 (+) 441 WP_244258272.1 gamma-glutamylcyclotransferase family protein -
  GLX30_RS24070 (GLX30_24200) - 5441799..5443925 (-) 2127 WP_159692239.1 molybdopterin oxidoreductase family protein -
  GLX30_RS24075 (GLX30_24205) - 5444144..5444725 (-) 582 WP_159692241.1 TIGR03086 family metal-binding protein -
  GLX30_RS24080 (GLX30_24210) - 5444790..5445443 (-) 654 WP_159692243.1 ElyC/SanA/YdcF family protein -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 66030.53 Da        Isoelectric Point: 6.0009

>NTDB_id=357556 GLX30_RS24055 WP_208545475.1 5439057..5440922(+) (rcrQ) [Streptomyces sp. Tu 2975]
MSGTTPERRGPAGQQRGPGGIGSPSLERSLHFRASGLRLLRMTAPERPLVIGVLAAGAAAVALSVLAPKLLGHATDLVVD
GAAGPDGVDFRAVAEVLGLVLGLVAVSSGTTLIQMRLAMTVVQRVGHRLREEAGTKLSRLPLSYFDEQPRGEVLSRTTND
IDNITQTMQQAFSQMVRAVLTIAGVLAMMFWISPLLALVAVATVPLSVYVATLIGKRAQPQFVRQWSVTGRLNAHVEEMF
TGHAEVRSFGRGKQAVETFDELGEQLYASSLRAQVMSGLIQPALGFVGNLNYVLIAVAGGLRVASGSLSIGDVQAFVQYS
YEFNGPINQVAAMANLLQSGVASAERVFDLLDAEEESQAPTGPGRPGPKGGRPAGHVSFEKAAFRYHPAEPLIEDLSLDV
EPGRTVAIVGPTGAGKTTLVNLLMRFYEVTDGRILLDGVDIRDMTRDELRSGIGMVLQDTWLFGGTIADNIAYGVPGEVS
REQIVAAATATHADRFIRTLPDGYDTVVDEEGGGLSAGEKQLLTIARAFLTEPSILVLDEATSSVDTRTEVLIQRAMSSL
RRGRTSFVIAHRLSTVRDADVILVMDAGRIVEQGTHEELLGRGGAYARLHAAQFAAAGSPV

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=357556 GLX30_RS24055 WP_208545475.1 5439057..5440922(+) (rcrQ) [Streptomyces sp. Tu 2975]
ATGAGCGGCACCACACCGGAGCGCCGCGGCCCGGCCGGGCAGCAGCGCGGTCCCGGGGGCATCGGCTCCCCCTCACTGGA
ACGCTCCCTCCACTTCCGGGCCTCCGGACTGCGGCTGCTGCGTATGACCGCACCGGAACGCCCGCTGGTCATCGGCGTCC
TCGCCGCCGGCGCGGCCGCCGTCGCCCTCTCCGTGCTCGCCCCCAAACTCCTCGGCCATGCCACCGACCTCGTCGTCGAC
GGCGCGGCGGGCCCGGACGGGGTCGACTTCAGGGCCGTCGCCGAGGTGCTGGGACTCGTCCTGGGCCTGGTCGCCGTCTC
CTCCGGTACGACGCTGATCCAGATGCGGCTCGCGATGACCGTCGTGCAGCGCGTCGGCCACCGGCTGCGTGAGGAGGCGG
GGACGAAGCTGTCGCGGCTGCCCCTGTCGTACTTCGACGAGCAACCCCGCGGGGAGGTGCTCAGCCGCACCACCAACGAC
ATCGACAACATCACGCAGACCATGCAGCAGGCCTTCAGCCAGATGGTGCGGGCGGTGCTCACCATCGCCGGCGTGCTGGC
GATGATGTTCTGGATCTCGCCGTTGCTGGCCCTGGTCGCCGTCGCGACGGTGCCGCTGTCCGTCTACGTGGCGACCCTCA
TCGGCAAGCGGGCCCAGCCGCAGTTCGTCCGGCAGTGGTCGGTGACGGGCAGGCTGAACGCCCATGTCGAGGAGATGTTC
ACCGGCCACGCGGAGGTTCGCTCCTTCGGCCGCGGGAAGCAGGCCGTGGAGACCTTCGACGAACTGGGCGAGCAGCTGTA
CGCGTCGAGCCTGCGCGCCCAGGTCATGTCCGGCCTCATCCAGCCCGCCCTCGGCTTCGTCGGCAACCTCAACTACGTAC
TGATCGCCGTCGCCGGAGGGCTGCGGGTGGCCTCCGGATCGCTGTCGATCGGCGACGTGCAGGCCTTCGTGCAGTACTCC
TACGAGTTCAACGGCCCCATCAACCAGGTCGCCGCGATGGCCAACCTCCTCCAGTCGGGCGTCGCCTCCGCCGAGCGGGT
CTTCGACCTGCTGGACGCGGAGGAGGAGTCCCAGGCGCCGACCGGCCCGGGGCGCCCCGGGCCGAAGGGGGGACGGCCCG
CAGGCCATGTGTCCTTCGAGAAGGCCGCCTTCCGCTACCACCCCGCGGAGCCGCTGATCGAGGATCTGTCGCTCGACGTC
GAACCGGGCCGGACCGTCGCCATCGTCGGCCCCACCGGCGCGGGCAAGACCACGCTGGTCAATCTGCTCATGCGGTTCTA
CGAGGTCACCGACGGCCGCATCCTGCTCGACGGCGTCGACATCAGGGACATGACCCGCGACGAACTGCGTTCCGGCATCG
GGATGGTGCTCCAGGACACCTGGCTGTTCGGGGGCACGATCGCCGACAACATCGCCTACGGCGTCCCCGGGGAGGTGTCC
CGCGAGCAGATCGTCGCCGCAGCGACGGCCACCCACGCCGACCGGTTCATCCGCACCCTGCCCGACGGCTACGACACCGT
GGTCGACGAGGAGGGCGGGGGCCTGAGCGCGGGCGAGAAGCAACTCCTCACCATCGCCCGCGCCTTCCTCACCGAACCGT
CGATCCTCGTGCTCGACGAGGCCACCAGCTCGGTCGACACCCGCACCGAGGTGCTCATCCAGCGGGCCATGTCCTCGCTG
CGCCGGGGTCGTACAAGTTTCGTCATCGCGCACCGGCTCTCCACTGTCCGGGACGCCGACGTGATCCTGGTGATGGACGC
CGGAAGGATCGTCGAGCAGGGCACGCACGAGGAACTGCTGGGACGCGGCGGCGCGTACGCCCGTCTCCACGCGGCGCAGT
TCGCCGCGGCCGGGTCCCCCGTGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(54-324)

ABC transporter (ABC_tran)

(394-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.676

89.05

0.38

Multiple sequence alignment