Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   GLX30_RS22950 Genome accession   NZ_CP047140
Coordinates   5162028..5164244 (+) Length   738 a.a.
NCBI ID   WP_159691902.1    Uniprot ID   -
Organism   Streptomyces sp. Tu 2975     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5157028..5169244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLX30_RS22915 (GLX30_23035) - 5157448..5158281 (+) 834 WP_244258261.1 sugar phosphate isomerase/epimerase family protein -
  GLX30_RS22920 (GLX30_23040) - 5158360..5158800 (-) 441 WP_159691892.1 hypothetical protein -
  GLX30_RS35925 - 5158936..5159700 (-) 765 WP_208545464.1 RHS repeat domain-containing protein -
  GLX30_RS22935 (GLX30_23055) - 5159772..5160383 (+) 612 WP_159691896.1 hypothetical protein -
  GLX30_RS22940 (GLX30_23060) - 5160493..5161011 (+) 519 WP_159691898.1 SigE family RNA polymerase sigma factor -
  GLX30_RS22945 (GLX30_23065) - 5161541..5161690 (+) 150 WP_159691900.1 hypothetical protein -
  GLX30_RS22950 (GLX30_23070) recD/recD2/recDB 5162028..5164244 (+) 2217 WP_159691902.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GLX30_RS22955 (GLX30_23075) - 5164492..5165781 (+) 1290 WP_159691904.1 citrate synthase -
  GLX30_RS22960 (GLX30_23080) - 5166166..5168406 (-) 2241 WP_347879783.1 heavy metal translocating P-type ATPase -
  GLX30_RS22965 (GLX30_23085) - 5168516..5168839 (-) 324 WP_159691907.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79578.30 Da        Isoelectric Point: 7.1389

>NTDB_id=357552 GLX30_RS22950 WP_159691902.1 5162028..5164244(+) (recD/recD2/recDB) [Streptomyces sp. Tu 2975]
MSNPVAFQPAVLEGVLERITYANEENGYTVARVDTGRGGDLLTVVGSLLGAQVGESLRMEGRWGSHPQYGKQFTVENYTT
VLPATIQGIRRYLGSGLIKGIGPKIAERIVDHFGTDTLDVIEQEPKRLIEVPGLGPKRTKMIGVAWEEQKAIKEVMVFLQ
GVGVSTSIAVRIYKKYEDASISVVRNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLP
EEQLIADAVKLLQVDTGLVIECLAELAADEEGVVRERVPGPEGGETVTAVYLVPFHRAELSLAGQVRRLLTAQDDRMPAF
KDVAWDKALAWLADRTGAKLAPEQEAAVRLALTAKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLAE
LTGAEASTVHRLLELKPGGDAAYDKDRPLDADLVIVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRD
LLADGGPVPSVRLTRIFRQAQQSGVITNAHRINTGLPPITSGLPDFFLFVEEETEDAGRVTVDVAARRIPAKFGLDPRRD
VQVLAPMHRGPAGAGTLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGRNGVFNGTVGVVTALHPDDQRL
TVLTDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVVLVGSRKAIGQAV
RTVSAGRRCTGLAHRLAA

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=357552 GLX30_RS22950 WP_159691902.1 5162028..5164244(+) (recD/recD2/recDB) [Streptomyces sp. Tu 2975]
ATGTCCAATCCGGTCGCGTTCCAACCCGCGGTGCTCGAAGGCGTGCTCGAGCGGATCACGTACGCCAACGAGGAGAACGG
CTACACGGTCGCCCGCGTCGACACCGGCCGTGGCGGCGACCTGCTCACCGTCGTCGGCTCGCTGCTCGGCGCGCAGGTCG
GCGAGTCGCTGCGGATGGAGGGCCGTTGGGGCTCTCACCCGCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACCACC
GTCCTGCCGGCCACGATCCAGGGCATACGGCGCTATCTCGGCTCCGGCCTGATCAAGGGGATCGGTCCGAAGATCGCCGA
GCGGATCGTCGACCACTTCGGCACGGACACCCTCGATGTCATCGAGCAGGAGCCGAAGCGGCTCATCGAGGTGCCGGGCC
TCGGACCGAAGCGGACCAAGATGATCGGCGTGGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAA
GGGGTCGGCGTCTCGACGTCCATCGCGGTGCGGATCTACAAGAAGTACGAGGACGCCTCCATCTCGGTCGTGCGGAACCA
GCCGTACCGCCTGGCCGCCGATGTGTGGGGCATCGGCTTCCTGACCGCCGACAGGATCGCGCAGGCGGTGGGCATACCCC
ACGACAGCCCCGAGCGGGTCAAGGCAGGCCTGCAGTACGCCCTGTCCCAGTCGACCGACCAGGGGCACTGCTTCCTGCCC
GAGGAGCAACTGATCGCCGACGCGGTGAAGTTGCTCCAGGTCGACACCGGACTGGTCATCGAGTGCCTCGCGGAGCTCGC
GGCCGACGAGGAGGGCGTCGTGCGGGAGCGGGTGCCCGGACCGGAAGGGGGAGAGACCGTGACGGCCGTTTACCTGGTGC
CGTTCCACCGCGCCGAACTGTCCCTCGCCGGGCAGGTGCGGCGGCTGCTGACCGCGCAGGACGACCGGATGCCCGCCTTC
AAGGACGTCGCCTGGGACAAGGCGCTGGCCTGGCTCGCGGACCGTACGGGCGCGAAGCTGGCGCCCGAGCAGGAGGCGGC
CGTCAGGCTGGCACTGACCGCCAAGGTCGCCGTGCTGACGGGCGGCCCCGGTTGCGGCAAGTCGTTCACGGTCCGCTCCA
TCGTCGAACTGGCCCGCGCCAAGAAGGCCAAGGTGGTGCTCGCGGCTCCCACCGGCCGCGCGGCGAAGCGGCTCGCCGAG
CTCACCGGTGCCGAGGCGTCGACCGTGCACCGGCTGCTGGAGCTCAAGCCCGGCGGGGACGCGGCGTACGACAAGGACCG
GCCGCTGGACGCGGACCTCGTCATCGTCGACGAGGCGTCGATGCTCGACCTGCTGCTCGCCAACAAGCTGGTCAAGGCCG
TGGCGCCGGGCGCGCACCTGCTGCTGGTGGGGGACGTGGACCAGCTGCCGAGCGTGGGCGCGGGGGAGGTGCTGCGCGAT
CTGCTGGCGGACGGCGGTCCGGTGCCGAGCGTGCGCCTGACCCGGATCTTCCGGCAGGCTCAGCAGTCGGGTGTCATCAC
CAACGCCCACAGGATCAACACCGGCCTGCCGCCCATCACTTCGGGCCTCCCGGACTTCTTCCTGTTCGTCGAGGAGGAGA
CCGAGGACGCGGGAAGAGTGACCGTCGACGTGGCGGCCCGCCGGATCCCGGCGAAGTTCGGGCTCGACCCGCGCCGCGAT
GTGCAGGTCCTCGCGCCGATGCACCGCGGCCCGGCCGGTGCGGGGACGCTCAACGGGCTGCTTCAGCAGGCGATCACCCC
GGCCCGTCCGGACCTCCCGGAGAAGCGGTTCGGCGGCCGGGTCTTCCGTGTCGGCGACAAGGTCACCCAGATCCGTAACA
ATTATGAGAAAGGGCGCAACGGCGTCTTCAACGGCACGGTCGGCGTCGTCACGGCACTGCACCCGGACGACCAGCGGCTG
ACCGTGCTGACGGACGAGGACGAGGAGGTGCCGTACGACTTCGACGAGCTGGACGAGCTGGCGCACGCCTACGCGGTGAC
CATTCACCGCTCCCAGGGCAGCGAATATCCGGCTGTGGTGATCCCGGTCACCACGGGGGCGTGGATGATGCTCCAGCGGA
ATCTGCTGTACACGGCCGTCACCCGCGCGAAGAGACTGGTGGTCCTGGTCGGGTCCCGTAAGGCGATAGGCCAGGCGGTC
CGGACCGTTTCCGCAGGCAGGCGCTGCACCGGCCTCGCGCACCGCCTCGCCGCGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-238)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(577-642)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-710)

Helix-hairpin-helix domain (HHH_5)

(98-142)

AAA domain (AAA_30)

(340-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.471

100

0.367