Detailed information NTG0356848

Bioinformatically predicted

Overview

• Name: pilE
• Type: Machinery gene
• Locus tag: E5093_RS13710
• Genome accession: NZ_CP039031
• Coordinates: 2876066..2876500 (-)
• Length: 144 a.a.
• NCBI ID: WP_177156094.1
• Uniprot ID: -
• Organism: Acinetobacter indicus strain yy_1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2876066..2893916	2876066..2876500	within	0

Gene organization within MGE regions

Location: 2876066..2893916

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5093_RS13710 (E5093_13825)	pilE	2876066..2876500 (-)	435	WP_177156094.1	type IV pilin protein	Machinery gene
E5093_RS15315 (E5093_13830)	-	2876494..2877129 (-)	636	WP_104473453.1	type IV pilin protein	-
E5093_RS13720 (E5093_13835)	-	2877134..2880985 (-)	3852	WP_177156095.1	hypothetical protein	-
E5093_RS13725 (E5093_13840)	-	2880995..2881750 (-)	756	WP_171431623.1	hypothetical protein	-
E5093_RS13730 (E5093_13845)	-	2881761..2882786 (-)	1026	WP_410487192.1	PilW family protein	-
E5093_RS13735 (E5093_13850)	pilV	2882762..2883286 (-)	525	WP_177156096.1	type IV pilus modification protein PilV	-
E5093_RS13740 (E5093_13855)	-	2883283..2883819 (-)	537	WP_177156097.1	Tfp pilus assembly protein FimT/FimU	-
E5093_RS13745 (E5093_13860)	ispH	2883983..2884933 (-)	951	WP_104500732.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
E5093_RS13750 (E5093_13865)	gmk	2885069..2885692 (+)	624	WP_045795273.1	guanylate kinase	-
E5093_RS13755 (E5093_13870)	rpoZ	2885769..2886050 (+)	282	WP_004809957.1	DNA-directed RNA polymerase subunit omega	-
E5093_RS13760 (E5093_13875)	-	2886274..2888373 (+)	2100	WP_104498093.1	RelA/SpoT family protein	-
E5093_RS13765 (E5093_13880)	-	2888445..2888828 (+)	384	WP_005180461.1	RidA family protein	-
E5093_RS13770 (E5093_13885)	-	2888983..2889177 (+)	195	WP_034597991.1	bacterioferritin-associated ferredoxin	-
E5093_RS13775 (E5093_13890)	bfr	2889404..2889868 (+)	465	WP_168389502.1	bacterioferritin	-
E5093_RS13780 (E5093_13895)	-	2889977..2891617 (-)	1641	WP_177156098.1	PglL family O-oligosaccharyltransferase	-
E5093_RS13785 (E5093_13900)	tfpZ	2891709..2892443 (-)	735	WP_177156099.1	TfpX/TfpZ family type IV pilin accessory protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 15840.22 Da
• Isoelectric Point: 8.9420

>NTDB_id=356848 E5093_RS13710 WP_177156094.1 2876066..2876500(-) (pilE) [Acinetobacter indicus strain yy_1]
MVRQGFTLIELMIVIAIIAILAAIAYPSYQQYKIKVNRAEAQSEMMFIAERMNAYKGMNGSFAGATIAQIYGSTVTPKQG
TALYDLSFDAALTNATRWTLIAQPKAGTLQAGNGWICLNNQSEKYWAKGEARCDLSPNSTWSDK

Nucleotide

• Length: 435 bp

>NTDB_id=356848 E5093_RS13710 WP_177156094.1 2876066..2876500(-) (pilE) [Acinetobacter indicus strain yy_1]
ATGGTAAGACAAGGGTTTACACTTATAGAACTTATGATTGTCATTGCGATTATTGCAATTTTAGCTGCTATTGCTTATCC
CTCTTATCAGCAATATAAAATTAAAGTAAATCGGGCAGAAGCACAATCAGAGATGATGTTCATTGCTGAAAGAATGAATG
CCTATAAAGGAATGAATGGTTCTTTTGCGGGGGCAACGATTGCACAAATATATGGATCAACAGTAACTCCCAAACAAGGC
ACTGCATTATATGATTTAAGCTTTGATGCTGCACTAACCAATGCAACCCGTTGGACTCTAATTGCTCAACCTAAGGCAGG
TACGTTACAAGCGGGCAATGGTTGGATTTGTTTAAACAATCAATCAGAGAAATATTGGGCAAAAGGCGAAGCGCGTTGTG
ACTTGTCGCCAAACTCTACCTGGTCCGATAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (3-26)

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (27-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilE	Acinetobacter baumannii D1279779	53.846	99.306	0.535
comF	Acinetobacter baylyi ADP1	49.65	99.306	0.493