Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPZ77_RS22695 Genome accession   NZ_CP046905
Coordinates   4941457..4942440 (+) Length   327 a.a.
NCBI ID   WP_158990100.1    Uniprot ID   -
Organism   Streptomyces sp. QHH-9511     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4936457..4947440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - amiE 4941457..4942440 (+) 984 - - Regulator

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35978.69 Da        Isoelectric Point: 6.2820

>NTDB_id=356668 GPZ77_RS22695 WP_158990100.1 4941457..4942440(+) (amiE) [Streptomyces sp. QHH-9511]
MLLEVRDLHVEFHTRDGVAKAVNGVDYSVDEGETLAVLGESGSGKSVTAQAVMGILDMPPGRITGGEILFQGQDLLKLKE
EERRKVRGAKMAMIFQDALSSLNPVISVGDQLGEMFQVHRGMSRKDSRAKAVELMDRVRIPAAKERVGQYPHQFSGGMRQ
RIMIAMALALEPELIIADEPTTALDVTVQAQVMDLLAELQRELHMGLILITHDLGVVADVADKIAVMYAGRIVEHAPVHE
IYEAPAHPYTKGLLESIPRLDQKGSQLYAIKGLPPNLLAIPPGCAFNPRCPLAQDRCRTDVPPLYEVTESPVPRRSACHY
WKECLHG

Nucleotide


Download         Length: 984 bp        

>NTDB_id=356668 GPZ77_RS22695 WP_158990100.1 4941457..4942440(+) (amiE) [Streptomyces sp. QHH-9511]
ATGCTGCTCGAAGTCCGTGACCTGCACGTGGAGTTCCACACCCGGGACGGGGTGGCCAAGGCGGTCAACGGTGTCGACTA
CTCGGTGGACGAGGGCGAGACGCTCGCCGTGCTCGGCGAGTCGGGTTCAGGCAAATCCGTCACCGCCCAGGCCGTCATGG
GCATCCTCGACATGCCCCCCGGGAGGATCACCGGCGGCGAGATCCTCTTCCAGGGCCAGGACCTGCTGAAGCTCAAGGAG
GAGGAGCGGCGCAAGGTCCGGGGCGCCAAGATGGCCATGATCTTCCAGGACGCGCTCTCCTCCTTGAACCCGGTGATCAG
CGTCGGCGACCAGCTGGGGGAGATGTTCCAGGTCCACCGGGGCATGTCGAGGAAGGACTCCCGCGCCAAGGCCGTCGAGC
TGATGGACCGGGTCCGCATCCCGGCGGCGAAGGAGCGGGTGGGCCAGTACCCGCACCAGTTCTCCGGCGGCATGCGCCAG
CGCATCATGATCGCGATGGCGCTCGCGCTCGAACCCGAGCTGATCATCGCCGACGAGCCGACCACCGCGCTCGACGTCAC
CGTCCAGGCCCAGGTCATGGACCTCCTCGCCGAGCTCCAGCGCGAGCTCCACATGGGCCTCATCCTCATCACCCACGACC
TCGGCGTCGTCGCCGACGTCGCAGACAAGATCGCCGTGATGTACGCCGGCCGGATCGTGGAGCACGCGCCCGTCCACGAG
ATCTACGAGGCACCCGCCCACCCCTACACCAAGGGCCTGCTCGAATCGATTCCGCGCCTGGACCAGAAGGGCTCGCAGCT
GTACGCGATCAAGGGGCTGCCGCCGAACCTCCTCGCCATCCCGCCCGGCTGTGCCTTCAACCCCCGCTGCCCCCTCGCCC
AGGACCGGTGCCGCACCGACGTACCGCCGCTCTACGAGGTCACCGAGTCCCCGGTCCCGCGCAGGAGCGCCTGCCACTAC
TGGAAGGAGTGCCTCCATGGTTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.188

97.859

0.462
  oppD Streptococcus mutans UA159

48.22

94.495

0.456
  amiE Streptococcus thermophilus LMG 18311

46.562

97.859

0.456
  amiE Streptococcus thermophilus LMD-9

46.562

97.859

0.456