Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPZ77_RS22670 Genome accession   NZ_CP046905
Coordinates   4935504..4936562 (+) Length   352 a.a.
NCBI ID   WP_158994661.1    Uniprot ID   -
Organism   Streptomyces sp. QHH-9511     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4930504..4941562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - amiE 4935504..4936562 (+) 1059 - - Regulator

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38499.41 Da        Isoelectric Point: 6.5020

>NTDB_id=356667 GPZ77_RS22670 WP_158994661.1 4935504..4936562(+) (amiE) [Streptomyces sp. QHH-9511]
MDNTGKTATVPAPRDGDDYNGPLLEVRDLHVEFHTRDGVAKAVNGVNYSVNAGETLAVLGESGSGKSVTAQAIMGILDMP
PGKIPQGEIFFRGEDMLKMSYEERRKIRGRKIAMIFQDALSSLNPVLTVGYQLGEMYRVHHGLSKKEAKAKAIELMDKVK
IPAAAARVNDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVHELYKRPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLLRVPTGCAFNPRCPKAEDICRT
EIPALAPVAEQDGTELPGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=356667 GPZ77_RS22670 WP_158994661.1 4935504..4936562(+) (amiE) [Streptomyces sp. QHH-9511]
ATCGACAACACGGGCAAGACCGCGACCGTTCCCGCGCCGCGCGACGGCGACGACTACAACGGTCCCCTGCTCGAAGTCCG
TGACCTGCATGTGGAGTTCCACACCCGTGACGGTGTGGCCAAGGCGGTCAACGGTGTCAACTACTCCGTCAACGCGGGGG
AGACGCTCGCCGTGCTCGGCGAGTCCGGCTCCGGCAAGTCCGTCACCGCGCAGGCCATCATGGGCATCCTCGACATGCCG
CCGGGCAAGATCCCACAGGGCGAGATCTTCTTCCGCGGCGAGGACATGCTCAAGATGTCCTACGAGGAGCGCCGGAAGAT
CCGCGGCCGGAAGATCGCCATGATCTTCCAGGACGCGCTCTCCTCCCTGAACCCGGTCCTCACCGTCGGCTACCAGCTCG
GCGAGATGTACCGGGTGCACCACGGCCTCTCCAAGAAGGAGGCCAAGGCCAAGGCCATCGAGCTGATGGACAAGGTCAAG
ATCCCCGCCGCCGCGGCGCGGGTGAACGACTACCCCCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCCAT
GGCGCTCGCCCTGGAGCCGGATCTGATCATCGCGGACGAGCCCACCACGGCGCTCGACGTGACGGTCCAGGCGCAGGTCA
TGGACCTCCTCGCGGAGCTCCAGCGCGAATACAACATGGGCCTGATCCTGATCACCCACGACCTCGGCGTCGTCGCCGAC
GTCGCGGACAAGATCGCGGTCATGTACGCGGGCCGGATCGTCGAGACCGCCCCCGTCCACGAGCTGTACAAGCGCCCGGC
CCACCCGTACACCCGGGGTCTGCTCGACTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTGTACGCGATCAAGGGTC
TGCCGCCCAACCTGCTCCGCGTCCCCACCGGCTGCGCCTTCAACCCGCGCTGCCCGAAGGCCGAAGACATCTGCCGCACG
GAGATCCCGGCGCTCGCGCCGGTCGCCGAGCAGGACGGCACGGAGCTGCCCGGCCGCGGCAGCGCCTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(44-202)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

52.365

84.091

0.44
  amiE Streptococcus thermophilus LMG 18311

52.027

84.091

0.437
  amiE Streptococcus thermophilus LMD-9

52.027

84.091

0.437
  oppD Streptococcus mutans UA159

49.026

87.5

0.429