Detailed information NTG0356587

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E5Q08_RS10405
• Genome accession: NZ_CP038987
• Coordinates: 2078583..2079749 (+)
• Length: 388 a.a.
• NCBI ID: WP_010888696.1
• Uniprot ID: Q9RSQ9
• Organism: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2073583..2084749

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5Q08_RS10385	-	2073796..2074086 (+)	291	WP_027479958.1	hypothetical protein	-
E5Q08_RS10390	-	2074162..2074599 (+)	438	WP_034350316.1	hypothetical protein	-
E5Q08_RS10395	-	2074605..2075615 (-)	1011	WP_010888693.1	WD40 repeat domain-containing protein	-
E5Q08_RS10400	pnp	2075707..2078046 (+)	2340	WP_027479957.1	polyribonucleotide nucleotidyltransferase	-
E5Q08_RS10405	pilD	2078583..2079749 (+)	1167	WP_010888696.1	prepilin peptidase	Machinery gene
E5Q08_RS10410	-	2079951..2080409 (-)	459	WP_010888697.1	divergent PAP2 family protein	-
E5Q08_RS10415	nusB	2080433..2081011 (-)	579	WP_010888698.1	transcription antitermination factor NusB	-
E5Q08_RS10420	-	2081008..2081415 (-)	408	WP_010888699.1	Asp23/Gls24 family envelope stress response protein	-
E5Q08_RS10425	ligA	2081486..2083570 (-)	2085	WP_051618817.1	NAD-dependent DNA ligase LigA	-

Sequence

Protein

• Length: 388 a.a.
• Molecular weight: 41204.65 Da
• Isoelectric Point: 5.8430

>NTDB_id=356587 E5Q08_RS10405 WP_010888696.1 2078583..2079749(+) (pilD) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R2]
MNVDTLIVLFAGLLGLLVGSFSNVLIWRLPRGENIAFPPSHCPKCDHPLKPTDLVPVFSWLALGGRCRYCRAPINPRYPV
VELLTGVAYAVIAATFPLSTYEAGTLGLMVLFTILLVGSAIDLDTMTLPDELTLPGTLLGVLFGLAGAGLYAQEGQLGLP
NVAQAVEGALMGAGVIVLISVYGSWVLRRFRERQWPEAPIGYQQISLGLLAGAWLGPWWGLGVALLSAAVNVAAKKAVRI
PELLTLGGFLVSLALSSAGTGPGLLDMLRGGLMAAGAVSLVCGVYWWIYWRRNKQAEDDGTDDEQSDPVAMGFGDVKLAA
VIGAFLGWERLLLAVVVAIFAGAVLGLVQLALKQENRVKFGPYLALGAVVALLWGGPLLDWYRGLLGM

Nucleotide

• Length: 1167 bp

>NTDB_id=356587 E5Q08_RS10405 WP_010888696.1 2078583..2079749(+) (pilD) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. R2]
GTGAACGTCGACACCCTCATCGTCCTCTTCGCCGGGCTGCTGGGCCTGCTGGTGGGGTCTTTTTCCAATGTGCTGATCTG
GCGCCTGCCGAGAGGCGAAAACATCGCTTTTCCGCCGAGCCACTGCCCCAAGTGCGACCATCCGCTCAAGCCCACCGACC
TCGTGCCGGTCTTTTCCTGGCTGGCGCTGGGAGGCCGCTGCCGCTACTGCCGCGCACCCATTAACCCGCGCTATCCGGTG
GTGGAACTGCTCACGGGCGTCGCCTACGCCGTCATTGCCGCGACGTTTCCGCTGAGCACCTACGAGGCGGGCACGCTGGG
ACTGATGGTGCTGTTCACGATTTTGCTCGTCGGCAGCGCGATTGACCTCGACACCATGACTCTCCCTGACGAGCTGACGC
TGCCCGGCACCCTGCTCGGCGTGCTGTTCGGGCTCGCGGGCGCGGGGCTCTACGCGCAGGAGGGTCAGTTGGGCCTGCCC
AACGTCGCGCAGGCGGTGGAAGGCGCGCTGATGGGCGCGGGCGTCATCGTCTTGATCAGCGTGTACGGCTCGTGGGTGCT
GCGGCGCTTCCGCGAACGGCAGTGGCCTGAAGCGCCCATCGGTTACCAGCAAATCAGCCTGGGGCTGCTGGCAGGCGCGT
GGCTGGGGCCGTGGTGGGGCCTGGGCGTCGCGCTGCTCTCGGCGGCGGTCAACGTGGCGGCGAAAAAGGCCGTGCGGATT
CCTGAACTGCTCACGCTGGGCGGCTTTCTGGTCAGCCTCGCCCTGAGCAGCGCGGGCACAGGGCCGGGCCTGCTCGACAT
GCTGCGCGGCGGCCTGATGGCGGCGGGCGCCGTCTCGCTCGTCTGCGGCGTGTACTGGTGGATCTACTGGCGGCGCAACA
AGCAGGCTGAAGACGACGGCACCGACGACGAGCAGAGTGACCCGGTGGCGATGGGCTTCGGGGACGTGAAGCTCGCCGCT
GTGATTGGCGCCTTTCTGGGCTGGGAGCGGCTGCTGCTTGCCGTGGTGGTGGCAATTTTTGCGGGCGCCGTGCTGGGGCT
GGTGCAACTCGCGCTCAAGCAGGAAAACCGGGTCAAGTTCGGCCCTTACCTCGCCCTGGGGGCCGTCGTCGCGCTGCTGT
GGGGCGGGCCGCTGCTGGACTGGTACCGGGGGCTGCTAGGGATGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (109-229)

• Type IV leader peptidase family (Peptidase_A24) (238-347)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-96)

3D structure

• AlphaFold DB: Q9RSQ9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	100	100	1