Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY07_RS05070 Genome accession   NZ_CP046840
Coordinates   1137916..1138899 (+) Length   327 a.a.
NCBI ID   WP_000211039.1    Uniprot ID   Q9KUA6
Organism   Vibrio cholerae strain F9993     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1132916..1143899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY07_RS05055 - 1134059..1135729 (+) 1671 WP_000880698.1 ABC transporter substrate-binding protein -
  GPY07_RS05060 - 1135899..1136885 (+) 987 WP_000540337.1 ABC transporter permease -
  GPY07_RS05065 - 1136888..1137913 (+) 1026 WP_000646270.1 ABC transporter permease -
  GPY07_RS05070 amiE 1137916..1138899 (+) 984 WP_000211039.1 ABC transporter ATP-binding protein Regulator
  GPY07_RS05075 - 1138942..1139937 (+) 996 WP_000042558.1 ABC transporter ATP-binding protein -
  GPY07_RS05080 - 1139994..1141718 (+) 1725 WP_000925616.1 glycoside hydrolase family 9 protein -
  GPY07_RS05085 - 1141715..1142599 (+) 885 WP_001110418.1 N-acetylglucosamine kinase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 36654.41 Da        Isoelectric Point: 6.9407

>NTDB_id=356402 GPY07_RS05070 WP_000211039.1 1137916..1138899(+) (amiE) [Vibrio cholerae strain F9993]
MTTPLISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKPPAFITGGEVIFNGEDILKY
SDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVITRHTNMTREQAKRRAEGLLEIVDIHPSRLNDYPHQFSGGMRQ
RLVIAIALALNPKMIIMDEPTTALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSKQ
ILETPYHPYTKGLGSSFPPLTGPKTKLTGIPGNPLNLLDIPQGCRFQARCDRVHEACTKVPTVLRQIEHGRFSNCHLYTQ
SNATIKR

Nucleotide


Download         Length: 984 bp        

>NTDB_id=356402 GPY07_RS05070 WP_000211039.1 1137916..1138899(+) (amiE) [Vibrio cholerae strain F9993]
ATGACTACGCCATTAATCTCAATCCGCAACTTATGCGTGGACTACATTACCGATGCTGGTGACGTCCGTGCCTGTAACAA
TGTGAGCTTTGATTTAGCCCCCGGCGAGGTGTTTGGCCTTGCGGGTGAATCCGGCTGTGGTAAATCCACCGTTGCCTTCT
CGCTGATGCGCCTGCATAAGCCGCCCGCGTTCATCACTGGTGGCGAGGTGATCTTCAACGGTGAAGACATCCTGAAATAC
AGTGATGAGCGCATGCAAGCGTTCCGTTGGAAAGAAATGTCGATGGTATTTCAAAGTGCGATGAACGCGCTGAACCCAGT
TCTGACCATGGAAGAGCAATTTTGCGATGTGATCACGCGCCATACCAATATGACGCGTGAACAAGCCAAACGTCGTGCTG
AAGGGCTGTTAGAAATTGTGGATATTCACCCAAGCCGTCTTAACGATTATCCGCACCAGTTCTCGGGTGGTATGCGTCAA
CGCTTGGTGATTGCAATTGCGCTCGCGCTCAATCCAAAAATGATCATTATGGATGAACCTACGACCGCGCTAGATGTTGT
CGTTCAGCGTGAAATTCTGCAGAAGATCTACGCACTCAAAGAAGAGTTTGGTTTCTCTATTCTGTTCATTACTCATGACT
TGTCACTGATGGTCGAGTTCTCAGACCGTATCGGCATCATGTACTCCGGTGAATTGATTGAAGTGGCTCCTTCAAAACAA
ATTCTGGAAACCCCTTACCACCCTTATACCAAAGGGTTGGGAAGTTCTTTTCCACCATTAACTGGACCAAAAACAAAACT
CACAGGGATCCCTGGAAACCCACTCAACCTGTTGGACATTCCTCAAGGTTGCCGTTTCCAAGCTCGCTGTGACCGAGTTC
ATGAAGCTTGTACTAAGGTACCGACCGTACTGCGCCAAATCGAGCATGGCCGCTTTTCTAACTGCCATCTCTATACGCAA
TCGAACGCCACTATAAAACGCTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(26-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KUA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.69

88.685

0.361
  amiE Streptococcus thermophilus LMD-9

40.69

88.685

0.361