Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VEA_RS01315 Genome accession   NC_013456
Coordinates   269183..269908 (+) Length   241 a.a.
NCBI ID   WP_006741795.1    Uniprot ID   -
Organism   Vibrio antiquarius     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 264183..274908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS01300 (VEA_001874) - 265316..267637 (+) 2322 WP_012841215.1 Tex family protein -
  VEA_RS01305 (VEA_001875) - 267742..268206 (-) 465 WP_005379316.1 hypothetical protein -
  VEA_RS01310 (VEA_001876) bioH 268331..269098 (-) 768 WP_006741796.1 pimeloyl-ACP methyl ester esterase BioH -
  VEA_RS01315 (VEA_001878) comF 269183..269908 (+) 726 WP_006741795.1 amidophosphoribosyltransferase Machinery gene
  VEA_RS01320 (VEA_001879) nfuA 270006..270590 (+) 585 WP_006741794.1 Fe-S biogenesis protein NfuA -
  VEA_RS01325 (VEA_001880) nudE 270767..271336 (+) 570 WP_005394971.1 ADP compounds hydrolase NudE -
  VEA_RS01330 (VEA_001881) cysQ 271381..272208 (+) 828 WP_005394972.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VEA_RS01335 (VEA_001882) - 272510..273271 (-) 762 WP_006741793.1 type II secretion system protein N -
  VEA_RS01340 (VEA_001883) - 273273..273764 (-) 492 WP_012841219.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27774.99 Da        Isoelectric Point: 9.3979

>NTDB_id=35619 VEA_RS01315 WP_006741795.1 269183..269908(+) (comF) [Vibrio antiquarius]
MLSHHWQNIMHRVLSSQCGLCRFPIHTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKASREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=35619 VEA_RS01315 WP_006741795.1 269183..269908(+) (comF) [Vibrio antiquarius]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTGTTGAGCAGTCAATGCGGTCTGTGTCGGTTCCCTATTCACAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAGAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGCTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACCAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCTCAATCACAGCGTGGTAATACCAAAGCAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

47.917

99.585

0.477

Multiple sequence alignment