Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   E5L67_RS08005 Genome accession   NZ_CP038868
Coordinates   1542125..1542862 (-) Length   245 a.a.
NCBI ID   WP_002780246.1    Uniprot ID   A0A5T1L8T6
Organism   Campylobacter coli strain 16SHKX65C     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1537125..1547862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5L67_RS07965 - 1537238..1537999 (+) 762 WP_072212081.1 ATP-binding protein -
  E5L67_RS07970 - 1537996..1538679 (+) 684 WP_060785324.1 3-methyladenine DNA glycosylase -
  E5L67_RS07975 thiD 1538679..1539491 (+) 813 WP_002822374.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  E5L67_RS07980 thiE 1539481..1540113 (+) 633 WP_162284675.1 thiamine phosphate synthase -
  E5L67_RS07985 - 1540091..1540720 (+) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  E5L67_RS07990 - 1540713..1541165 (-) 453 WP_002777117.1 hypothetical protein -
  E5L67_RS07995 - 1541162..1541830 (-) 669 WP_002790524.1 hypothetical protein -
  E5L67_RS08000 - 1541823..1542128 (-) 306 WP_002790525.1 hypothetical protein -
  E5L67_RS08005 proC 1542125..1542862 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  E5L67_RS08010 fliW 1542862..1543251 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  E5L67_RS08015 - 1543416..1544063 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  E5L67_RS08020 lon 1544079..1546454 (+) 2376 WP_162284676.1 endopeptidase La -
  E5L67_RS08025 rpsR 1546510..1546770 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  E5L67_RS08030 - 1546781..1547329 (-) 549 WP_002777084.1 single-stranded DNA-binding protein -
  E5L67_RS08035 rpsF 1547338..1547715 (-) 378 WP_002777082.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 26797.20 Da        Isoelectric Point: 9.3032

>NTDB_id=356080 E5L67_RS08005 WP_002780246.1 1542125..1542862(-) (proC) [Campylobacter coli strain 16SHKX65C]
MKADLYILANGAMAQALAYGLKDSYNIYIVGRNLEKLQILEKEGFKTLLYKDFNIENKNIILAFKPYALESVAANLKGKA
KILISVLANTDFDKLKLIQAQNYARIMPNTAAKYKASTTPYVLKNSNFKDEVIEILNTFGKAYELNEEKQMNAAMAISGC
APAFLALVAESIANAGVYEGLSKELSLNLTRSLFKSAAALLENEHPAIIKENICSPAGVTIKGIKVLEQKGIRGTFFEAL
NASAT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=356080 E5L67_RS08005 WP_002780246.1 1542125..1542862(-) (proC) [Campylobacter coli strain 16SHKX65C]
ATGAAAGCTGATTTATATATACTTGCTAATGGTGCGATGGCGCAAGCTTTGGCTTATGGATTAAAAGATTCTTATAATAT
CTATATAGTCGGTAGAAATTTAGAAAAGCTTCAAATTTTAGAAAAAGAAGGTTTTAAAACTTTACTCTATAAAGATTTTA
ATATAGAAAATAAAAATATTATCTTAGCTTTTAAACCTTATGCCTTAGAAAGTGTCGCAGCAAATTTAAAAGGCAAGGCA
AAAATTTTAATTTCAGTTTTAGCCAATACGGATTTTGATAAATTAAAACTTATCCAAGCCCAAAATTATGCAAGGATAAT
GCCAAATACAGCAGCTAAATATAAAGCTTCCACAACTCCTTATGTTTTAAAAAATTCAAATTTTAAAGATGAAGTCATAG
AAATTTTAAATACTTTTGGCAAGGCTTATGAGTTAAACGAAGAAAAACAAATGAATGCTGCGATGGCTATAAGCGGTTGC
GCTCCTGCTTTTTTAGCATTAGTAGCTGAAAGCATTGCTAATGCTGGCGTGTATGAAGGATTATCAAAAGAGCTGAGTTT
AAATCTCACTCGTTCGCTTTTTAAAAGTGCTGCAGCCTTGCTAGAAAACGAGCACCCAGCCATCATTAAGGAAAATATCT
GCTCGCCTGCAGGTGTTACCATAAAAGGGATTAAAGTATTAGAGCAAAAAGGTATCCGTGGGACTTTTTTTGAGGCTCTT
AATGCTAGTGCAACATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(7-88)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(148-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1L8T6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

80.833

97.959

0.792

Multiple sequence alignment