Detailed information NTG0355549

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: E5Z44_RS09960
• Genome accession: NZ_CP038807
• Coordinates: 2127326..2129713 (-)
• Length: 795 a.a.
• NCBI ID: WP_002492901.1
• Uniprot ID: A0A853V584
• Organism: Staphylococcus lugdunensis strain APC 3758
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2122326..2134713

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5Z44_RS09935 (E5Z44_10070)	-	2122346..2122987 (-)	642	WP_037540784.1	O-methyltransferase	-
E5Z44_RS09940 (E5Z44_10075)	-	2123349..2123657 (-)	309	WP_002458948.1	DUF1292 domain-containing protein	-
E5Z44_RS09945 (E5Z44_10080)	ruvX	2123670..2124098 (-)	429	WP_002458947.1	Holliday junction resolvase RuvX	-
E5Z44_RS09950 (E5Z44_10085)	-	2124102..2124362 (-)	261	WP_002458946.1	IreB family regulatory phosphoprotein	-
E5Z44_RS09955 (E5Z44_10090)	alaS	2124428..2127058 (-)	2631	WP_037540786.1	alanine--tRNA ligase	-
E5Z44_RS09960 (E5Z44_10095)	recD2	2127326..2129713 (-)	2388	WP_002492901.1	ATP-dependent RecD-like DNA helicase	Machinery gene
E5Z44_RS09965 (E5Z44_10100)	-	2129715..2130386 (-)	672	WP_002492893.1	tetratricopeptide repeat protein	-
E5Z44_RS09970 (E5Z44_10105)	mnmA	2130528..2131640 (-)	1113	WP_002492894.1	tRNA 2-thiouridine(34) synthase MnmA	-
E5Z44_RS09975 (E5Z44_10110)	-	2131640..2132782 (-)	1143	WP_002492915.1	cysteine desulfurase family protein	-
E5Z44_RS09980 (E5Z44_10115)	-	2133012..2134013 (+)	1002	WP_002458940.1	LLM class flavin-dependent oxidoreductase	-
E5Z44_RS12340 (E5Z44_10120)	-	2134214..2134354 (-)	141	WP_002458939.1	SAS049 family protein	-

Sequence

Protein

• Length: 795 a.a.
• Molecular weight: 89602.38 Da
• Isoelectric Point: 4.8235

>NTDB_id=355549 E5Z44_RS09960 WP_002492901.1 2127326..2129713(-) (recD2) [Staphylococcus lugdunensis strain APC 3758]
MDNPTLLEPTMLKGTVEVILFQNQDNFYTVLKVDTIESNESFDTMPTVVGFFPNIVEGDVYTFKGQVVAHPKYGKQLKAD
TFEKELPQTKDAIITYLSSDLFKGIGKKTAQNIVNTLGENAINDILAHPDILTKVSNLSKKKQEQIAQQIAANQESEKIM
IYLHDLGFGPKLSMAIYQFYQSETINVVDNNPYKLVYDIKGIGFNKADTLARNIGIDFNDPERLKAGILFTLEEECIKQG
HTYLPAETILKSAQTMLSTQGDEIIEIHQLEEMLQILMEEDKLILDQQKIAIPSLYYSELKSVQNLYRILTHTHKLNELE
QSDLQLHIGEIEDSNEVHYAASQKEALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYADYTDDDFPVVLA
APTGRASKRLQEATGLEAMTIHRLIGWNQDTQPEDILDNEIKAKLIIIDEMSMVDTWLFHQFLNAVPLDAQIVFVGDEDQ
LPSVGPGQVFKDLIQSKKIPRVNLTEVYRQQDGSSIIELAHHMKQNESIDITKRYHDRSFINCSAEQIPDVVKKVVSSAV
SKGYDMSDIQVLAPMYKGSAGIKRLNQILQTILNPKEPDAREIEFGDAAFRKGDKVLQLVNRPNDNIFNGDIGIIVGIFW
AKENALNKDVIIVDFDGNEITFTRQDLIELTHAYCTSIHKSQGSEFPIVIMPVVKQYFRMLQKPILYTGLTRAKQSLVLL
GDPQAFDIGLKTNGQVRMTQLYDLLEAYFGHETQNSNDDNIIAKHKKVTLSAATIYQIDPMINMNQMTPYDFIER

Nucleotide

• Length: 2388 bp

>NTDB_id=355549 E5Z44_RS09960 WP_002492901.1 2127326..2129713(-) (recD2) [Staphylococcus lugdunensis strain APC 3758]
ATGGATAACCCTACACTTCTTGAACCGACGATGTTAAAGGGCACCGTCGAAGTTATTTTGTTCCAAAATCAAGATAATTT
CTATACTGTACTTAAAGTTGATACCATTGAATCTAACGAATCGTTCGATACGATGCCAACGGTTGTAGGGTTTTTCCCAA
ATATTGTTGAAGGCGACGTATACACCTTTAAAGGACAGGTTGTTGCGCATCCAAAATATGGCAAACAACTAAAAGCTGAT
ACATTTGAAAAAGAATTACCACAAACGAAAGATGCTATTATTACCTACTTATCAAGTGATTTATTTAAAGGTATTGGTAA
AAAGACAGCACAAAATATTGTTAATACTTTGGGAGAAAATGCAATAAATGATATTTTAGCTCATCCAGACATATTAACAA
AAGTTTCAAATCTTTCTAAAAAGAAACAAGAGCAAATTGCACAACAAATAGCAGCCAATCAAGAATCAGAAAAAATCATG
ATATACTTACATGATTTAGGGTTTGGCCCTAAACTATCAATGGCAATCTATCAGTTTTATCAAAGTGAAACAATAAACGT
CGTTGATAATAACCCGTATAAACTTGTATATGATATTAAAGGAATTGGATTTAATAAAGCTGATACATTAGCACGTAATA
TCGGCATCGACTTTAATGACCCAGAACGATTAAAAGCTGGCATATTATTCACACTAGAGGAAGAATGTATTAAACAAGGG
CATACTTATTTACCTGCTGAAACAATTCTTAAATCAGCACAAACAATGTTAAGTACGCAAGGGGATGAAATAATTGAAAT
ACATCAACTTGAAGAAATGTTGCAAATTTTAATGGAAGAAGATAAGTTGATTCTTGATCAACAAAAAATTGCCATCCCCA
GTCTTTACTACTCAGAATTAAAAAGCGTACAAAACTTATATCGTATATTAACTCATACCCATAAATTAAATGAACTTGAG
CAATCTGATTTACAGTTGCATATTGGAGAGATAGAAGATAGCAATGAAGTACATTATGCTGCATCACAAAAAGAGGCTTT
ACAAACAGCTATAAACTCAAAAATCATGTTATTAACTGGCGGACCTGGAACTGGTAAGACAACTGTCATTAAAGGTATTG
TAGAGTTATACGCTGAAATTCATGGACTTTCTTTAGATTATGCGGATTACACTGATGATGATTTCCCAGTAGTATTAGCA
GCTCCTACAGGCAGAGCATCGAAACGTTTACAAGAAGCTACTGGCTTAGAGGCAATGACCATCCACCGACTTATAGGATG
GAATCAAGATACACAACCAGAAGACATTTTAGATAATGAAATTAAAGCAAAATTAATTATCATAGATGAAATGTCTATGG
TTGACACTTGGTTATTTCATCAGTTTTTAAATGCGGTACCTTTAGATGCCCAAATTGTATTTGTTGGAGATGAAGACCAA
CTGCCTTCTGTTGGGCCTGGACAAGTATTTAAGGACTTAATCCAGTCTAAAAAAATACCACGTGTCAATTTAACTGAAGT
CTACCGACAACAAGATGGTTCAAGTATTATTGAATTAGCTCACCACATGAAACAAAACGAATCCATAGATATTACAAAAC
GTTATCATGATAGAAGCTTCATTAATTGTAGTGCAGAACAAATTCCTGACGTTGTTAAGAAAGTAGTATCCAGTGCAGTT
AGTAAAGGATATGACATGAGTGATATTCAAGTACTTGCTCCCATGTATAAAGGAAGTGCAGGTATTAAACGTTTAAATCA
AATTCTGCAAACAATTTTAAATCCTAAAGAACCAGACGCCCGTGAAATTGAATTTGGTGATGCTGCATTCCGCAAAGGCG
ATAAAGTATTACAGTTAGTAAATCGTCCTAATGACAATATTTTTAATGGAGATATTGGTATTATTGTTGGCATTTTTTGG
GCAAAAGAAAATGCTTTAAATAAAGATGTTATTATCGTCGATTTTGACGGTAATGAAATTACATTTACACGACAAGACTT
AATTGAATTAACGCATGCATATTGCACTTCGATTCATAAGTCCCAAGGTTCAGAATTCCCAATCGTTATTATGCCCGTAG
TGAAACAATATTTTAGAATGTTACAAAAACCTATTCTTTATACTGGTTTGACTAGAGCTAAACAATCTTTAGTATTACTA
GGGGATCCACAAGCCTTTGACATTGGCCTTAAAACAAATGGTCAAGTTAGAATGACGCAATTATATGATTTATTAGAAGC
ATATTTTGGACACGAAACGCAGAATTCTAATGATGATAATATCATAGCTAAACATAAAAAAGTTACATTATCAGCAGCGA
CAATTTATCAAATAGATCCGATGATCAACATGAATCAAATGACGCCATATGACTTTATTGAACGTTGA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

• AAA domain (AAA_30) (339-544)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

3D structure

• AlphaFold DB: A0A853V584

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	50.063	100	0.503