Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   E4N74_RS12930 Genome accession   NZ_CP038804
Coordinates   2246150..2246317 (-) Length   55 a.a.
NCBI ID   WP_420832878.1    Uniprot ID   -
Organism   Treponema putidum strain OMZ 835     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2241150..2251317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4N74_RS10475 (E4N74_10785) ileS 2241318..2244620 (-) 3303 WP_255817579.1 isoleucine--tRNA ligase -
  E4N74_RS10480 (E4N74_10790) - 2244820..2245395 (+) 576 WP_044978021.1 glucosaminidase domain-containing protein -
  E4N74_RS10485 - 2245817..2245960 (-) 144 WP_158506566.1 hypothetical protein -
  E4N74_RS12930 rcrQ 2246150..2246317 (-) 168 WP_420832878.1 hypothetical protein Regulator
  E4N74_RS10495 (E4N74_10800) - 2246441..2246746 (-) 306 WP_255817581.1 hypothetical protein -
  E4N74_RS10500 (E4N74_10805) - 2246880..2247452 (-) 573 WP_255805225.1 TetR/AcrR family transcriptional regulator -
  E4N74_RS10505 - 2247798..2248982 (+) 1185 WP_255817582.1 ATP-binding protein -
  E4N74_RS10510 - 2248988..2250073 (+) 1086 WP_255817583.1 ATP-binding protein -

Sequence

Protein


Download         Length: 55 a.a.        Molecular weight: 6147.20 Da        Isoelectric Point: 5.7003

>NTDB_id=355514 E4N74_RS12930 WP_420832878.1 2246150..2246317(-) (rcrQ) [Treponema putidum strain OMZ 835]
MDKMTSNVDPVNEALIQEAITELSKNRTVLVIAHLKTIQQADQILVFRKGGLIEI

Nucleotide


Download         Length: 168 bp        

>NTDB_id=355514 E4N74_RS12930 WP_420832878.1 2246150..2246317(-) (rcrQ) [Treponema putidum strain OMZ 835]
TTGGATAAGATGACTAGCAATGTCGATCCCGTAAACGAAGCACTTATACAAGAAGCAATTACGGAGCTTTCAAAAAACAG
AACGGTACTGGTTATCGCACATCTAAAGACTATTCAACAAGCGGATCAAATTCTCGTCTTCCGAAAGGGCGGCCTTATCG
AAATATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.727

100

0.527

Multiple sequence alignment