Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   E4N76_RS14075 Genome accession   NZ_CP038802
Coordinates   2439904..2440071 (-) Length   55 a.a.
NCBI ID   WP_420832878.1    Uniprot ID   -
Organism   Treponema putidum strain OMZ 847     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2434904..2445071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4N76_RS11590 (E4N76_11800) ileS 2435072..2438374 (-) 3303 WP_044978019.1 isoleucine--tRNA ligase -
  E4N76_RS11595 (E4N76_11805) - 2438574..2439149 (+) 576 WP_255805224.1 glucosaminidase domain-containing protein -
  E4N76_RS11600 - 2439571..2439714 (-) 144 WP_158506566.1 hypothetical protein -
  E4N76_RS14075 rcrQ 2439904..2440071 (-) 168 WP_420832878.1 hypothetical protein Regulator
  E4N76_RS11610 (E4N76_11815) - 2440255..2440500 (-) 246 Protein_2277 ABC transporter ATP-binding protein -
  E4N76_RS11615 (E4N76_11820) - 2440634..2441206 (-) 573 WP_255805225.1 TetR/AcrR family transcriptional regulator -
  E4N76_RS11620 - 2441552..2442736 (+) 1185 WP_255805226.1 ATP-binding protein -
  E4N76_RS11625 - 2443216..2443827 (+) 612 WP_255806604.1 ATP-binding protein -

Sequence

Protein


Download         Length: 55 a.a.        Molecular weight: 6147.20 Da        Isoelectric Point: 5.7003

>NTDB_id=355500 E4N76_RS14075 WP_420832878.1 2439904..2440071(-) (rcrQ) [Treponema putidum strain OMZ 847]
MDKMTSNVDPVNEALIQEAITELSKNRTVLVIAHLKTIQQADQILVFRKGGLIEI

Nucleotide


Download         Length: 168 bp        

>NTDB_id=355500 E4N76_RS14075 WP_420832878.1 2439904..2440071(-) (rcrQ) [Treponema putidum strain OMZ 847]
TTGGATAAGATGACTAGCAATGTCGATCCCGTAAACGAAGCACTTATACAAGAAGCAATTACGGAGCTTTCAAAAAACAG
AACGGTACTGGTTATCGCACATCTAAAGACTATTCAACAAGCGGATCAAATTCTCGTCTTCCGAAAGGGCGGCCTTATCG
AAATATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.727

100

0.527

Multiple sequence alignment