Detailed information NTG0355008

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: EQK04_RS12105
• Genome accession: NZ_CP038517
• Coordinates: 2358774..2361158 (-)
• Length: 794 a.a.
• NCBI ID: WP_173962613.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain SCU11
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2353774..2366158

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQK04_RS12070 (EQK04_12165)	-	2354678..2355406 (+)	729	WP_007501456.1	amino acid ABC transporter ATP-binding protein	-
EQK04_RS12075 (EQK04_12170)	-	2355421..2356230 (+)	810	WP_017367698.1	transporter substrate-binding domain-containing protein	-
EQK04_RS12080 (EQK04_12175)	-	2356315..2356968 (+)	654	WP_007501460.1	amino acid ABC transporter permease	-
EQK04_RS12085 (EQK04_12180)	-	2356984..2357634 (+)	651	WP_017367699.1	amino acid ABC transporter permease	-
EQK04_RS12090 (EQK04_12185)	-	2357673..2357804 (-)	132	WP_008342695.1	YrzQ family protein	-
EQK04_RS12095 (EQK04_12190)	-	2357825..2358016 (-)	192	WP_003216308.1	hypothetical protein	-
EQK04_RS12100 (EQK04_12195)	-	2358030..2358488 (-)	459	WP_017367700.1	PRC-barrel domain-containing protein	-
EQK04_RS12105 (EQK04_12200)	recD2	2358774..2361158 (-)	2385	WP_173962613.1	ATP-dependent RecD-like DNA helicase	Machinery gene
EQK04_RS12110 (EQK04_12205)	-	2361178..2361831 (-)	654	WP_017367702.1	tetratricopeptide repeat protein	-
EQK04_RS12115 (EQK04_12210)	mnmA	2361893..2363011 (-)	1119	WP_008342709.1	tRNA 2-thiouridine(34) synthase MnmA	-
EQK04_RS12120 (EQK04_12215)	-	2363106..2364248 (-)	1143	WP_017367703.1	cysteine desulfurase family protein	-
EQK04_RS12125 (EQK04_12220)	cymR	2364267..2364686 (-)	420	WP_008342713.1	cysteine metabolism transcriptional regulator CymR	-
EQK04_RS12130 (EQK04_12225)	-	2364893..2366158 (+)	1266	WP_008342715.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 88995.38 Da
• Isoelectric Point: 5.0594

>NTDB_id=355008 EQK04_RS12105 WP_173962613.1 2358774..2361158(-) (recD2) [Bacillus altitudinis strain SCU11]
MQEHPDQMKLEDEPFLKGTVKAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFSALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGKLGNQTLHQIMRDPSVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPDRIRAALLYTVETA
SLQDGHTYIQTKDLIIETRKLLNQTGNDYKVTEMDVANQIIALGEGKDMIIEDDRCYHPSLFYAEQSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
AFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEDQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASQAIPAVTLTDIYRQADGSTIVELAHDMKNGVLPKDITARSKDRSFIQCSSDQMKEVI
EKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQQILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLTETEEIMDAELAALQKELPFSVHDANIGMEGITPFDFMQE

Nucleotide

• Length: 2385 bp

>NTDB_id=355008 EQK04_RS12105 WP_173962613.1 2358774..2361158(-) (recD2) [Bacillus altitudinis strain SCU11]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAAGACGAACCGTTTTTAAAAGGGACGGTTAAAGCCGTTATTTTCCATAA
CGAAAGTAATTTATACTCGGTGTTAAAAGTAAAAGTCATTGAAACATCAGAGAATTTAGAGGAAAAAACAGCATCTGTCA
CAGGGTACTTCTCAGCGCTTCATGAGGAGGAAACCTACACCTTCTATGGCAAGGTCACAAGTCATCCGAAGTTTGGTGAG
CAGTTTCAAGCCACTCATTTTCAAAAGGAAGTCCCTACAACAAAACAAGGCATTATTCATTATCTCTCTAGTGACTTGTT
TGAAGGGATTGGGAAAAAGACGGCGGAAGAAATCGTCGGCAAGTTAGGCAATCAGACGCTTCATCAAATTATGCGTGATC
CGTCTGTTTTGTATGACGTCCCGCGCCTGTCAAAAAAGAAGGCAGATAAGCTGGCTGCCGCACTTCAGGAGCATCAGGGG
CTTGAGCAAATCATGATCAGCCTGAATCAATATGGCTTTGGTCCTCAGCTTAGCATGAAGATTTACCAAGTGTACGAGAG
TGAAACGTTGCAGAAAATTGAAGAAAACCCTTATCAGCTCGTCAAAGACGTAGAGGGGATTGGATTTATTAAAGCAGATG
AACTCGGCGCTAGAACAGGGATATCTGGAAATGATCCAGACCGCATTCGTGCAGCCCTTTTGTATACCGTTGAGACAGCA
AGCCTGCAAGACGGTCATACGTACATACAAACGAAAGATCTGATCATTGAAACCCGTAAATTGCTGAATCAAACAGGCAA
TGACTACAAAGTGACTGAAATGGACGTTGCCAATCAGATCATTGCACTTGGTGAAGGGAAAGACATGATCATTGAAGATG
ATCGCTGTTATCATCCTTCGCTCTTTTATGCGGAACAAAGTGTTGCAAAACGCATTCAAAAAATTGTCTCTCAAACAGAA
TATGCAGATCAATTTCCTGAATCAGAATTTCTTCTCGCACTTGGTGAATTGGAGGAGCGGCTGGGTGTCCAGTATGCACC
GACCCAAAAAGAAGCCATTCAAAAGGCACTCATGTCCCCGATGCTGCTCTTAACAGGCGGGCCGGGTACAGGGAAAACGA
CGGTCATTAAAGGGATTGTCGAGCTTTACAGCGATCTTCACGGCGTATCTCTTGATCCGAGTGATTATAAAAAAGATGAA
GCATTTCCGTTCGTACTTGCCGCACCAACTGGACGTGCTGCGAAACGAATGACAGAATCGACTGGACTCCCTGCTGTGAC
CATTCACCGGCTGCTAGGCTGGAATGGATCAGAAGGCTTCTCACATGATGAAGACCAGCCGATTGAAGGAAAGCTTGTCA
TCATTGATGAATCGAGTATGCTGGATATTTGGCTGGCGAACCATTTGTTTAAGGCGATCCCAGATCATATTCAAGTCATT
ATGGTTGGAGACGAACATCAACTTCCATCTGTCGGACCTGGTCAAGTGTTAAGAGACCTGCTTGCGTCACAAGCTATACC
GGCAGTTACACTAACTGATATTTACCGGCAGGCAGACGGTTCAACAATTGTTGAGCTTGCACATGATATGAAAAATGGTG
TTTTGCCAAAGGATATTACTGCACGCTCGAAGGATCGATCCTTTATTCAATGCTCTAGTGACCAAATGAAAGAAGTCATC
GAGAAAGTGGTCAGCAATGCTGCTCAAAAGGGGTATTCAGCAAAGGACATTCAAGTACTTGCCCCGATGTATAAAGGAAA
AGCAGGCATTAATGAACTGAATAAAATGCTTCAGCAAATTTTGAATCCTAAAAAGCCAAAAGGAAGAGAAATTCCTTTTG
GTGATGTCGTCTACCGGACAGGTGATAAGGTACTTCAGCTTGTCAATCAGCCCGAGAATAACATTTTTAATGGAGATATT
GGCGAAATTGTCTCGATCTTTTATGCGAAAGAAAACACAGAAAAAGAAGATATGGCGGTCATCTCCTTTGATGGAAATGA
AATCACGTTTACGAAAAAAGATTTTCATCAATTTACACACGCTTATTGTTGCTCGATTCATAAATCCCAGGGCAGTGAAT
TCCCAATCGTGGTGCTGCCAGTCGTGAGAAGTTATTATCGAATGCTTCGAAGAAATTTGCTTTACACGGCCATTACACGA
AGTAAAAAGTTTTTAATTTTGTGCGGCGAGGAATCAGCATTAGAGTGGGGCGTGAAAAATAATGAAGACTCCCTCAGACA
AACGTCTTTAACCATGCGTCTTACTGAAACGGAAGAAATCATGGACGCTGAGCTAGCAGCCCTCCAAAAAGAACTTCCTT
TCAGCGTACACGATGCCAATATTGGCATGGAGGGAATCACTCCGTTTGATTTTATGCAAGAGTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• AAA domain (AAA_30) (345-553)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	80.252	100	0.804