Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EQK04_RS07715 Genome accession   NZ_CP038517
Coordinates   1525599..1526378 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain SCU11     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1520599..1531378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK04_RS07695 (EQK04_07775) trmFO 1521303..1522607 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EQK04_RS07700 (EQK04_07780) xerC 1522670..1523587 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  EQK04_RS07705 (EQK04_07785) hslV 1523602..1524147 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  EQK04_RS07710 (EQK04_07790) hslU 1524164..1525564 (+) 1401 WP_017367242.1 HslU--HslV peptidase ATPase subunit -
  EQK04_RS07715 (EQK04_07795) codY 1525599..1526378 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EQK04_RS07720 (EQK04_07800) flgB 1526667..1527056 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  EQK04_RS07725 (EQK04_07805) flgC 1527056..1527508 (+) 453 WP_017367243.1 flagellar basal body rod protein FlgC -
  EQK04_RS07730 (EQK04_07810) fliE 1527520..1527837 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  EQK04_RS07735 (EQK04_07815) fliF 1527888..1529480 (+) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  EQK04_RS07740 (EQK04_07820) fliG 1529492..1530508 (+) 1017 WP_017367244.1 flagellar motor switch protein FliG -
  EQK04_RS07745 (EQK04_07825) fliH 1530501..1531265 (+) 765 WP_017367245.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=354996 EQK04_RS07715 WP_007499612.1 1525599..1526378(+) (codY) [Bacillus altitudinis strain SCU11]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=354996 EQK04_RS07715 WP_007499612.1 1525599..1526378(+) (codY) [Bacillus altitudinis strain SCU11]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAGGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGTGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATACAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATTAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment