Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPX93_RS02295 Genome accession   NZ_CP046749
Coordinates   471701..472684 (-) Length   327 a.a.
NCBI ID   WP_000211036.1    Uniprot ID   A0AAX1QPY5
Organism   Vibrio cholerae strain 2015V-1118     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 466701..477684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS02280 - 468001..468885 (-) 885 WP_184482598.1 N-acetylglucosamine kinase -
  GPX93_RS02285 - 468882..470606 (-) 1725 WP_123162399.1 glycoside hydrolase family 9 protein -
  GPX93_RS02290 - 470663..471658 (-) 996 WP_000042557.1 ABC transporter ATP-binding protein -
  GPX93_RS02295 amiE 471701..472684 (-) 984 WP_000211036.1 ABC transporter ATP-binding protein Regulator
  GPX93_RS02300 - 472687..473712 (-) 1026 WP_000646270.1 ABC transporter permease -
  GPX93_RS02305 - 473715..474701 (-) 987 WP_000540337.1 ABC transporter permease -
  GPX93_RS02310 - 474871..476541 (-) 1671 WP_000880698.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 36684.50 Da        Isoelectric Point: 6.9407

>NTDB_id=354830 GPX93_RS02295 WP_000211036.1 471701..472684(-) (amiE) [Vibrio cholerae strain 2015V-1118]
MTTPLISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKPPAFITGGEVIFNGEDILKY
SDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVIMRHTNMTREQAKRRAEGLLEIVDIHPSRLNDYPHQFSGGMRQ
RLVIAIALALNPKMIIMDEPTTALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSKQ
ILETPYHPYTKGLGSSFPPLTGPKTKLTGIPGNPLNLLDIPQGCRFQARCDRVHEACTKVPTVLRQIEHGRFSNCHLYTQ
SNATIKR

Nucleotide


Download         Length: 984 bp        

>NTDB_id=354830 GPX93_RS02295 WP_000211036.1 471701..472684(-) (amiE) [Vibrio cholerae strain 2015V-1118]
ATGACTACGCCATTAATCTCAATCCGCAACTTATGCGTGGACTACATTACCGATGCTGGTGACGTCCGTGCCTGTAACAA
TGTGAGCTTTGATTTAGCCCCCGGCGAGGTGTTTGGCCTTGCGGGTGAATCCGGTTGTGGTAAATCCACCGTTGCCTTCT
CGCTGATGCGCCTGCATAAGCCGCCCGCGTTCATCACTGGTGGCGAGGTGATCTTCAACGGTGAAGACATCCTGAAATAC
AGTGATGAGCGCATGCAAGCGTTCCGTTGGAAAGAAATGTCGATGGTATTTCAAAGTGCGATGAACGCGCTGAACCCAGT
TCTGACCATGGAAGAGCAATTTTGCGATGTGATCATGCGCCATACCAATATGACGCGTGAACAAGCCAAACGTCGTGCTG
AAGGGCTGTTAGAAATTGTGGATATTCACCCAAGCCGTCTTAACGATTATCCGCACCAGTTCTCGGGGGGTATGCGTCAA
CGCTTGGTGATTGCGATTGCGCTCGCGCTCAATCCAAAAATGATCATTATGGATGAACCCACGACCGCGCTAGATGTTGT
CGTTCAGCGTGAAATTCTGCAGAAGATCTACGCACTCAAAGAAGAGTTTGGTTTCTCTATTCTGTTCATTACTCATGACT
TGTCACTGATGGTCGAGTTCTCAGACCGTATCGGCATCATGTACTCCGGTGAATTGATTGAAGTGGCTCCTTCAAAACAA
ATTCTGGAAACCCCTTACCACCCTTATACCAAAGGGTTGGGAAGTTCTTTTCCACCATTAACTGGACCAAAAACAAAACT
CACAGGGATCCCTGGAAACCCGCTCAACCTGTTGGACATTCCTCAAGGTTGCCGTTTCCAAGCTCGCTGTGACCGAGTTC
ATGAAGCTTGTACTAAGGTACCGACCGTACTGCGCCAAATCGAGCATGGCCGCTTTTCTAACTGCCATCTCTATACGCAA
TCGAACGCCACTATAAAACGCTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(26-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAX1QPY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.69

88.685

0.361
  amiE Streptococcus thermophilus LMD-9

40.69

88.685

0.361