Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPW86_RS15405 Genome accession   NZ_CP046742
Coordinates   2030584..2031567 (-) Length   327 a.a.
NCBI ID   WP_000211036.1    Uniprot ID   A0AAX1QPY5
Organism   Vibrio cholerae strain 3523-03     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2025584..2036567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW86_RS15390 - 2026884..2027768 (-) 885 WP_184476180.1 N-acetylglucosamine kinase -
  GPW86_RS15395 - 2027765..2029489 (-) 1725 WP_123011346.1 glycoside hydrolase family 9 protein -
  GPW86_RS15400 - 2029546..2030541 (-) 996 WP_000042557.1 ABC transporter ATP-binding protein -
  GPW86_RS15405 amiE 2030584..2031567 (-) 984 WP_000211036.1 ABC transporter ATP-binding protein Regulator
  GPW86_RS15410 - 2031570..2032595 (-) 1026 WP_000646270.1 ABC transporter permease -
  GPW86_RS15415 - 2032598..2033584 (-) 987 WP_001888563.1 ABC transporter permease -
  GPW86_RS15420 - 2033754..2035424 (-) 1671 WP_000880698.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 36684.50 Da        Isoelectric Point: 6.9407

>NTDB_id=354616 GPW86_RS15405 WP_000211036.1 2030584..2031567(-) (amiE) [Vibrio cholerae strain 3523-03]
MTTPLISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKPPAFITGGEVIFNGEDILKY
SDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVIMRHTNMTREQAKRRAEGLLEIVDIHPSRLNDYPHQFSGGMRQ
RLVIAIALALNPKMIIMDEPTTALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSKQ
ILETPYHPYTKGLGSSFPPLTGPKTKLTGIPGNPLNLLDIPQGCRFQARCDRVHEACTKVPTVLRQIEHGRFSNCHLYTQ
SNATIKR

Nucleotide


Download         Length: 984 bp        

>NTDB_id=354616 GPW86_RS15405 WP_000211036.1 2030584..2031567(-) (amiE) [Vibrio cholerae strain 3523-03]
ATGACTACGCCATTAATCTCAATCCGCAACTTATGCGTGGACTACATTACCGATGCTGGTGACGTCCGTGCCTGTAACAA
TGTGAGCTTTGATTTAGCCCCCGGCGAGGTGTTTGGCCTTGCAGGTGAATCCGGCTGTGGTAAATCCACCGTTGCCTTCT
CGCTGATGCGCCTGCATAAGCCGCCCGCGTTCATCACTGGTGGCGAGGTGATCTTCAACGGTGAAGACATCCTGAAATAC
AGTGATGAGCGCATGCAAGCGTTCCGTTGGAAAGAAATGTCGATGGTATTTCAAAGTGCGATGAACGCGCTGAACCCAGT
TCTGACCATGGAAGAGCAATTTTGCGATGTGATCATGCGCCATACCAATATGACGCGTGAACAAGCCAAACGTCGTGCTG
AAGGGCTGTTAGAAATTGTGGATATTCATCCAAGCCGTCTTAACGATTATCCGCACCAGTTCTCGGGTGGTATGCGTCAA
CGCTTGGTGATTGCGATTGCGCTCGCGCTCAATCCAAAAATGATCATTATGGATGAACCTACGACCGCGCTAGATGTTGT
CGTTCAGCGTGAAATTCTGCAGAAGATCTACGCACTCAAAGAAGAGTTTGGTTTCTCTATTCTGTTCATTACTCATGACT
TGTCACTGATGGTCGAGTTCTCAGACCGTATCGGCATCATGTACTCCGGTGAATTGATTGAAGTGGCTCCTTCAAAACAA
ATTCTGGAAACCCCTTACCACCCTTATACCAAAGGGTTGGGAAGTTCTTTTCCACCATTAACTGGACCAAAAACAAAACT
CACAGGGATCCCTGGAAACCCGCTCAACCTGTTGGACATTCCTCAAGGTTGCCGTTTCCAAGCTCGCTGCGACCGAGTTC
ATGAAGCTTGTACTAAGGTACCGACCGTACTGCGCCAAATCGAGCATGGCCGCTTTTCTAACTGCCATCTCTATACGCAA
TCGAACGCCACTATAAAACGCTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(26-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAX1QPY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.69

88.685

0.361
  amiE Streptococcus thermophilus LMD-9

40.69

88.685

0.361