Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPW70_RS16395 Genome accession   NZ_CP046740
Coordinates   2528575..2529558 (+) Length   327 a.a.
NCBI ID   WP_000211036.1    Uniprot ID   A0AAX1QPY5
Organism   Vibrio cholerae strain 3566-06     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2523575..2534558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW70_RS16380 - 2524718..2526388 (+) 1671 WP_001888564.1 ABC transporter substrate-binding protein -
  GPW70_RS16385 - 2526558..2527544 (+) 987 WP_001888563.1 ABC transporter permease -
  GPW70_RS16390 - 2527547..2528572 (+) 1026 WP_001888562.1 ABC transporter permease -
  GPW70_RS16395 amiE 2528575..2529558 (+) 984 WP_000211036.1 ABC transporter ATP-binding protein Regulator
  GPW70_RS16400 - 2529601..2530596 (+) 996 WP_000042557.1 ABC transporter ATP-binding protein -
  GPW70_RS16405 - 2530653..2532377 (+) 1725 WP_158106862.1 glycoside hydrolase family 9 protein -
  GPW70_RS16410 - 2532374..2533258 (+) 885 WP_019829487.1 N-acetylglucosamine kinase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 36684.50 Da        Isoelectric Point: 6.9407

>NTDB_id=354535 GPW70_RS16395 WP_000211036.1 2528575..2529558(+) (amiE) [Vibrio cholerae strain 3566-06]
MTTPLISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKPPAFITGGEVIFNGEDILKY
SDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVIMRHTNMTREQAKRRAEGLLEIVDIHPSRLNDYPHQFSGGMRQ
RLVIAIALALNPKMIIMDEPTTALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSKQ
ILETPYHPYTKGLGSSFPPLTGPKTKLTGIPGNPLNLLDIPQGCRFQARCDRVHEACTKVPTVLRQIEHGRFSNCHLYTQ
SNATIKR

Nucleotide


Download         Length: 984 bp        

>NTDB_id=354535 GPW70_RS16395 WP_000211036.1 2528575..2529558(+) (amiE) [Vibrio cholerae strain 3566-06]
ATGACTACGCCATTAATCTCAATCCGCAACTTATGCGTGGACTACATTACCGATGCTGGTGACGTCCGCGCCTGTAACAA
TGTGAGCTTTGATTTAGCCCCCGGCGAGGTGTTTGGCCTTGCGGGTGAATCCGGCTGTGGTAAATCCACCGTTGCCTTCT
CGCTGATGCGCCTGCATAAGCCGCCCGCGTTCATCACTGGTGGCGAGGTGATCTTCAACGGTGAAGACATCCTGAAATAC
AGTGATGAGCGCATGCAAGCGTTCCGTTGGAAAGAAATGTCGATGGTATTTCAAAGTGCGATGAACGCGCTGAACCCAGT
TCTAACTATGGAAGAGCAGTTTTGCGATGTGATCATGCGCCATACCAATATGACGCGTGAACAAGCTAAACGTCGTGCGG
AAGGGCTGTTAGAAATTGTGGATATTCACCCAAGCCGTCTTAACGATTATCCGCACCAGTTCTCGGGTGGTATGCGTCAA
CGCTTGGTGATTGCGATTGCGCTCGCGCTCAATCCAAAAATGATCATTATGGATGAACCCACGACCGCACTAGATGTTGT
CGTTCAGCGTGAAATTCTGCAGAAGATCTACGCACTCAAAGAAGAGTTTGGTTTCTCTATTCTGTTCATTACTCATGACT
TGTCACTGATGGTCGAGTTCTCAGACCGTATCGGCATCATGTACTCCGGTGAATTGATTGAAGTGGCACCTTCAAAACAG
ATTCTGGAAACCCCTTACCACCCTTATACCAAAGGGTTGGGAAGTTCTTTTCCACCATTAACTGGACCAAAAACAAAACT
CACAGGGATCCCTGGAAACCCACTCAACCTGTTGGACATTCCTCAAGGTTGCCGTTTCCAAGCTCGCTGTGACCGAGTTC
ATGAAGCTTGTACTAAGGTACCGACCGTACTGCGCCAAATCGAGCATGGCCGCTTTTCTAACTGCCATCTCTATACGCAA
TCGAACGCCACTATAAAACGCTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(26-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAX1QPY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.69

88.685

0.361
  amiE Streptococcus thermophilus LMD-9

40.69

88.685

0.361

Multiple sequence alignment