Detailed information NTG0354486

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EBI04_RS10585
• Genome accession: NZ_CP038452
• Coordinates: 2003165..2004235 (-)
• Length: 356 a.a.
• NCBI ID: WP_135257420.1
• Uniprot ID: -
• Organism: Thermus caldilimi strain YIM 78456
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1998165..2009235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EBI04_RS10550	-	1998282..1999127 (+)	846	WP_135257416.1	NAD+ synthase	-
EBI04_RS10555	-	1999124..1999537 (+)	414	WP_135257417.1	CoA-binding protein	-
EBI04_RS10560	-	1999540..2000574 (+)	1035	WP_135257418.1	A/G-specific adenine glycosylase	-
EBI04_RS10565	-	2000458..2001156 (-)	699	WP_135257419.1	FAD-dependent oxidoreductase	-
EBI04_RS10575	-	2001362..2002227 (+)	866	Protein_2099	LysM peptidoglycan-binding domain-containing protein	-
EBI04_RS10580	-	2002231..2003156 (-)	926	Protein_2100	nitroreductase family protein	-
EBI04_RS10585	pilD	2003165..2004235 (-)	1071	WP_135257420.1	A24 family peptidase	Machinery gene
EBI04_RS13250	-	2004383..2004547 (-)	165	WP_158305225.1	hypothetical protein	-
EBI04_RS10590	-	2004663..2006198 (+)	1536	WP_135257421.1	carboxypeptidase M32	-
EBI04_RS10595	-	2006186..2007262 (-)	1077	WP_135257422.1	YbfB/YjiJ family MFS transporter	-
EBI04_RS10600	-	2007252..2008004 (-)	753	WP_135257423.1	ABC transporter permease	-
EBI04_RS10605	-	2007997..2008902 (-)	906	WP_135257424.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 38175.40 Da
• Isoelectric Point: 8.4336

>NTDB_id=354486 EBI04_RS10585 WP_135257420.1 2003165..2004235(-) (pilD) [Thermus caldilimi strain YIM 78456]
MWPFVALLLGLVVGSFLNVVIHRLPKGESIVFPPSRCPHCGHRLAPRDLVPVFSYLALKGRCRYCHSPISPRYPLVEALT
GLLFALAALFYPPSPQAFLTFAFLALLVALSFIDLDTYELPDSLTYGLLFLGLLSAYLLSFPRPFAEALDGALIAAGVLG
LVAGYGGLFLRRFREARAEVPVGPHQVHMAALFGALLGPGVGMALAFLTWALSGRTGKPVVLPDRITLSLLPLAWILAPY
LGADLLSTLKESLLAAGGLALAGGLYWAFKPLNEEGEETDPVAMGYGDVKLLGALGAWLGLYSLLALFLGVFAGALVGLA
FRQRKIPFGPYLALGGVVAFFFGEALWRAYMAWLGL

Nucleotide

• Length: 1071 bp

>NTDB_id=354486 EBI04_RS10585 WP_135257420.1 2003165..2004235(-) (pilD) [Thermus caldilimi strain YIM 78456]
ATGTGGCCCTTTGTTGCCCTGCTCCTCGGCCTGGTGGTGGGCTCCTTCCTGAACGTGGTCATCCACCGCCTGCCCAAAGG
GGAGTCCATCGTCTTCCCACCCTCCCGCTGCCCCCATTGCGGGCATCGCCTGGCCCCTAGGGACCTGGTTCCCGTGTTCT
CCTACCTGGCCCTTAAGGGGCGGTGCCGCTATTGCCATAGCCCCATATCCCCCCGCTATCCCCTGGTGGAGGCCCTCACG
GGCCTGCTTTTTGCCCTGGCCGCCCTCTTTTACCCTCCCTCGCCCCAGGCTTTCCTCACCTTCGCCTTCCTGGCCCTCCT
GGTGGCCCTTTCCTTCATAGACCTGGACACCTATGAGCTTCCCGATTCCCTCACCTACGGCCTTCTCTTCCTGGGGCTCC
TTTCCGCCTACCTTCTTTCCTTCCCCCGCCCCTTCGCCGAGGCCCTGGACGGGGCCTTGATCGCCGCCGGGGTCCTGGGG
CTGGTGGCGGGGTACGGAGGGCTTTTCCTGAGGCGCTTCCGCGAGGCCAGGGCGGAGGTGCCCGTGGGGCCCCACCAGGT
GCACATGGCGGCCCTTTTCGGGGCCCTCCTGGGCCCAGGGGTGGGCATGGCCCTGGCCTTCCTCACCTGGGCCCTTTCGG
GGCGCACGGGAAAACCCGTGGTGCTTCCCGACCGGATTACCCTTTCCCTCCTGCCCCTGGCCTGGATCCTGGCCCCCTAC
CTGGGGGCCGACCTCCTGAGCACCTTGAAAGAGTCCCTCCTGGCGGCAGGGGGGTTGGCCCTGGCAGGGGGGCTTTACTG
GGCCTTCAAACCCCTAAACGAGGAGGGGGAGGAAACCGATCCCGTGGCCATGGGCTATGGGGATGTGAAGCTTTTGGGGG
CGCTGGGAGCCTGGCTTGGGCTTTATAGCCTCCTGGCCCTGTTCCTGGGGGTCTTCGCCGGAGCCCTGGTGGGCCTGGCT
TTCCGGCAACGGAAAATCCCCTTCGGCCCCTACCTGGCCTTGGGAGGGGTGGTGGCCTTCTTCTTCGGGGAGGCCCTTTG
GCGGGCGTACATGGCCTGGCTAGGCCTATAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (8-89)

• Type IV leader peptidase family (Peptidase_A24) (222-319)

• Type IV leader peptidase family (Peptidase_A24) (102-200)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	46.174	100	0.492