Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPW74_RS12220 Genome accession   NZ_CP046737
Coordinates   2663862..2664845 (-) Length   327 a.a.
NCBI ID   WP_000211036.1    Uniprot ID   A0AAX1QPY5
Organism   Vibrio cholerae strain 2015V-1126     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2658862..2669845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW74_RS12205 - 2660162..2661046 (-) 885 WP_184478569.1 N-acetylglucosamine kinase -
  GPW74_RS12210 - 2661043..2662767 (-) 1725 WP_123012668.1 glycoside hydrolase family 9 protein -
  GPW74_RS12215 - 2662824..2663819 (-) 996 WP_000042557.1 ABC transporter ATP-binding protein -
  GPW74_RS12220 amiE 2663862..2664845 (-) 984 WP_000211036.1 ABC transporter ATP-binding protein Regulator
  GPW74_RS12225 - 2664848..2665873 (-) 1026 WP_000646270.1 ABC transporter permease -
  GPW74_RS12230 - 2665876..2666862 (-) 987 WP_000540337.1 ABC transporter permease -
  GPW74_RS12235 - 2667032..2668702 (-) 1671 WP_123012669.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 36684.50 Da        Isoelectric Point: 6.9407

>NTDB_id=354464 GPW74_RS12220 WP_000211036.1 2663862..2664845(-) (amiE) [Vibrio cholerae strain 2015V-1126]
MTTPLISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKPPAFITGGEVIFNGEDILKY
SDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVIMRHTNMTREQAKRRAEGLLEIVDIHPSRLNDYPHQFSGGMRQ
RLVIAIALALNPKMIIMDEPTTALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSKQ
ILETPYHPYTKGLGSSFPPLTGPKTKLTGIPGNPLNLLDIPQGCRFQARCDRVHEACTKVPTVLRQIEHGRFSNCHLYTQ
SNATIKR

Nucleotide


Download         Length: 984 bp        

>NTDB_id=354464 GPW74_RS12220 WP_000211036.1 2663862..2664845(-) (amiE) [Vibrio cholerae strain 2015V-1126]
ATGACTACGCCATTAATCTCAATCCGCAACTTATGCGTGGACTACATTACCGATGCTGGTGACGTCCGTGCCTGTAACAA
TGTGAGCTTTGATTTAGCCCCCGGCGAGGTGTTTGGCCTTGCGGGTGAATCCGGTTGTGGTAAATCCACCGTTGCCTTCT
CGCTGATGCGCCTGCATAAGCCGCCCGCGTTCATCACTGGTGGCGAGGTGATCTTCAACGGTGAAGACATCCTGAAGTAC
AGTGATGAACGCATGCAAGCGTTCCGTTGGAAAGAAATGTCGATGGTATTTCAAAGTGCGATGAACGCGCTGAACCCAGT
TCTGACCATGGAAGAGCAATTTTGCGATGTGATCATGCGCCATACCAATATGACGCGTGAACAAGCCAAACGTCGTGCTG
AAGGTCTGTTAGAAATTGTGGATATTCACCCAAGCCGTCTTAACGATTATCCGCACCAGTTCTCGGGTGGTATGCGTCAA
CGCTTAGTGATTGCGATTGCGCTCGCGCTCAATCCAAAAATGATCATTATGGATGAACCTACGACCGCGCTAGATGTTGT
CGTTCAGCGTGAAATTCTGCAGAAGATCTACGCACTCAAAGAAGAGTTTGGTTTCTCTATTCTGTTCATTACTCATGACT
TGTCACTGATGGTCGAGTTCTCAGACCGTATCGGCATCATGTACTCCGGTGAATTGATTGAAGTGGCTCCTTCAAAACAA
ATTCTGGAAACCCCTTACCACCCTTATACCAAAGGGTTGGGAAGTTCTTTTCCACCATTAACTGGACCAAAAACAAAACT
CACAGGGATCCCTGGAAACCCACTCAACCTGTTGGACATTCCTCAAGGTTGCCGTTTCCAAGCTCGCTGTGACCGAGTTC
ATGAAGCTTGTACTAAGGTACCGACCGTACTGCGCCAAATCGAGCATGGCCGCTTTTCTAACTGCCATCTCTATACGCAA
TCGAACGCCACTATAAAACGCTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(26-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAX1QPY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.69

88.685

0.361
  amiE Streptococcus thermophilus LMD-9

40.69

88.685

0.361