Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GPA00_RS06620 Genome accession   NZ_CP046629
Coordinates   1328296..1330173 (+) Length   625 a.a.
NCBI ID   WP_157327972.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1323296..1335173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS06605 (GPA00_06605) - 1323995..1325914 (+) 1920 WP_039690940.1 ABC-F family ATP-binding cassette domain-containing protein -
  GPA00_RS06610 (GPA00_06610) - 1326106..1326552 (+) 447 WP_021142069.1 MarR family winged helix-turn-helix transcriptional regulator -
  GPA00_RS06615 (GPA00_06615) - 1326545..1328296 (+) 1752 WP_024344676.1 ABC transporter ATP-binding protein -
  GPA00_RS06620 (GPA00_06620) rcrQ 1328296..1330173 (+) 1878 WP_157327972.1 ABC transporter ATP-binding protein Regulator
  GPA00_RS06625 (GPA00_06625) - 1330303..1330719 (+) 417 WP_157327974.1 cupin domain-containing protein -
  GPA00_RS06630 (GPA00_06630) - 1330857..1331822 (+) 966 WP_413083628.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  GPA00_RS06635 (GPA00_06635) - 1331854..1332858 (+) 1005 WP_157327976.1 alpha-ketoacid dehydrogenase subunit beta -
  GPA00_RS06640 (GPA00_06640) - 1332912..1333940 (+) 1029 Protein_1239 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 69846.34 Da        Isoelectric Point: 6.6507

>NTDB_id=354124 GPA00_RS06620 WP_157327972.1 1328296..1330173(+) (rcrQ) [Streptococcus equinus strain CNU G6]
MSQSKTQVNKQATLKRVLAYILKNYKWRFMAVFVLILISALCMVRFSLFMQTLIDSYITPLLAAKDPDFSGLAHAIFQLI
IIGIIGVASTYTFNRLMVYVGQGTMRRIRVDLFTHMESLPIKYFDTHAHGDIMSIYTNDVDTLRQLISQSIPQVVNSTFS
IVTTFVSMLVLNVPLSVLSLFMVVILLYVARKIAAQSSKYFHDQQNDLGRVNGFIEEMMDGQKVVKVFNHEERAKEDFRK
LNQELRESATNANIFANILMPVSANIGHFSYVLCAMLGAVLALNGYAGLTLGTLVSFLALNRGFTNPITQISQQINSVVM
AMAGADRVFQLLDAEPELDEGYVELVNAKEDAAGNLQEVEESTGIWAWKHPHEDGTVTYHKQEGRVTFTDVTFGYNDDKM
VLHDINLFAEPGQKIAFVGSTGAGKTTITNLINRFYDIQEGKIHYDGINIRKIKKADLRRSLGIVLQDTHLFTGTVMDNI
RYGRLNATDEECIEAAKLANAHDFIKRLPEGYDTILTGDGSNLSQGQRQLLAIARAAVANPPALILDEATSSIDTRTEVH
VQEGMDALMKGRTTFVIAHRLSTVRNADCIMVLEQGRIIERGNHDELIAQKGRYYQLYTGNAISE

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=354124 GPA00_RS06620 WP_157327972.1 1328296..1330173(+) (rcrQ) [Streptococcus equinus strain CNU G6]
ATGTCTCAATCTAAAACTCAAGTGAATAAACAGGCAACGCTAAAACGTGTTTTGGCTTATATTTTAAAAAACTATAAGTG
GCGATTTATGGCAGTGTTTGTTTTGATTTTAATCTCTGCCCTTTGTATGGTTCGTTTTAGTTTGTTTATGCAAACTTTGA
TTGATAGTTATATTACCCCTCTTTTAGCAGCTAAGGATCCTGATTTTTCAGGATTGGCACATGCTATTTTCCAATTGATT
ATTATTGGGATTATCGGGGTAGCAAGTACTTATACTTTTAACCGTCTTATGGTTTATGTTGGGCAAGGAACAATGCGACG
CATTCGTGTTGATTTATTCACACACATGGAAAGCTTGCCAATCAAGTACTTTGATACGCATGCTCACGGGGACATCATGT
CAATCTACACTAACGACGTTGATACCCTTCGTCAGTTGATTAGTCAAAGTATTCCGCAAGTGGTTAATTCAACTTTTTCT
ATCGTGACAACATTTGTCAGCATGCTTGTTTTGAACGTGCCGTTGTCAGTTTTGTCACTATTTATGGTTGTTATTCTACT
TTACGTAGCTCGTAAAATCGCTGCGCAATCATCAAAATATTTCCATGACCAACAAAATGATCTCGGTCGTGTCAATGGGT
TCATTGAGGAAATGATGGATGGTCAGAAAGTCGTTAAAGTTTTCAACCACGAAGAGCGTGCTAAGGAAGATTTCCGAAAA
CTTAACCAAGAACTTCGTGAATCTGCTACAAATGCCAACATCTTTGCGAATATCTTGATGCCAGTTTCTGCTAATATCGG
TCACTTTTCATATGTTCTTTGCGCCATGCTTGGAGCAGTTCTTGCTCTTAATGGTTATGCTGGCTTGACTTTGGGAACTT
TGGTTTCTTTCCTAGCATTAAACCGTGGTTTTACTAATCCGATTACTCAAATCAGTCAACAAATCAACTCTGTTGTTATG
GCGATGGCAGGTGCTGACCGTGTCTTCCAACTGCTAGATGCAGAACCTGAATTGGATGAAGGTTACGTTGAATTGGTTAA
TGCAAAAGAAGATGCTGCTGGAAATCTGCAAGAAGTGGAAGAATCAACTGGTATTTGGGCTTGGAAACATCCACACGAAG
ACGGTACAGTGACTTATCATAAACAAGAAGGTCGTGTAACTTTCACAGATGTAACTTTTGGTTATAACGATGATAAGATG
GTTTTACATGACATTAATTTGTTTGCGGAACCTGGTCAAAAAATCGCTTTTGTCGGCTCAACTGGTGCGGGTAAAACAAC
CATTACAAACTTGATTAACCGTTTCTACGATATCCAAGAAGGTAAGATTCATTACGATGGTATTAACATTCGTAAAATCA
AAAAAGCTGACCTTCGTCGTAGTTTAGGAATTGTATTGCAAGACACACACCTCTTTACAGGAACTGTTATGGATAACATC
CGCTACGGACGTTTGAATGCGACTGATGAAGAATGTATCGAAGCTGCCAAATTAGCTAATGCACATGATTTCATTAAACG
TTTGCCTGAAGGTTATGATACTATTTTGACAGGTGACGGAAGTAATCTTTCTCAAGGACAACGTCAATTGCTTGCGATTG
CGCGTGCAGCTGTGGCAAATCCACCTGCTTTGATTTTGGATGAGGCAACCTCATCAATTGATACGCGTACTGAAGTCCAC
GTGCAAGAAGGTATGGATGCTCTTATGAAAGGTCGTACAACATTTGTTATCGCTCACCGCTTGTCGACTGTTCGCAATGC
TGATTGTATCATGGTTCTTGAACAAGGACGCATCATCGAACGTGGTAACCACGACGAGTTGATTGCGCAAAAAGGACGTT
ATTACCAACTTTATACAGGTAATGCCATTAGTGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(402-551)

ABC transporter transmembrane region (ABC_membrane)

(30-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.898

98.72

0.384