Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GPA00_RS01490 Genome accession   NZ_CP046629
Coordinates   291982..292767 (-) Length   261 a.a.
NCBI ID   WP_021143055.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 286982..297767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS01470 (GPA00_01470) - 287401..288312 (-) 912 WP_157327252.1 DMT family transporter -
  GPA00_RS01475 (GPA00_01475) gatB 288486..289928 (-) 1443 WP_021143052.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  GPA00_RS01480 (GPA00_01480) gatA 289928..291394 (-) 1467 WP_024343597.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  GPA00_RS01485 (GPA00_01485) gatC 291394..291696 (-) 303 WP_004233135.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  GPA00_RS01490 (GPA00_01490) codY 291982..292767 (-) 786 WP_021143055.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GPA00_RS01495 (GPA00_01495) - 292972..294186 (-) 1215 WP_021143056.1 pyridoxal phosphate-dependent aminotransferase -
  GPA00_RS01500 (GPA00_01500) - 294223..295965 (-) 1743 WP_157327254.1 glycerophosphodiester phosphodiesterase -
  GPA00_RS01505 (GPA00_01505) - 296295..296747 (+) 453 WP_021143058.1 universal stress protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28891.01 Da        Isoelectric Point: 4.4574

>NTDB_id=354047 GPA00_RS01490 WP_021143055.1 291982..292767(-) (codY) [Streptococcus equinus strain CNU G6]
MPNLLEKTRKITSILQRSVDSLDTELPYNTMAAQLADIIDCNSCIINGGGNLLGYAMKYKTNTDRVEEFFQAKQFPEEYV
KAASRVYDTEANLSVDNDLTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDKEFSEDDLILVEIASTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVSAILGELDGTEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=354047 GPA00_RS01490 WP_021143055.1 291982..292767(-) (codY) [Streptococcus equinus strain CNU G6]
ATGCCGAATTTATTAGAAAAAACTAGAAAGATTACGTCAATTTTGCAACGCTCAGTTGATAGCCTTGATACCGAATTACC
ATATAACACAATGGCTGCTCAACTTGCTGACATTATTGACTGTAACTCTTGCATCATCAACGGAGGAGGAAACCTTCTTG
GTTATGCAATGAAGTATAAAACAAATACTGACCGCGTTGAAGAATTCTTTCAAGCGAAACAATTCCCTGAAGAATACGTA
AAAGCGGCTAGTCGTGTTTACGATACTGAAGCTAACTTGTCTGTAGATAATGATTTGACAATCTTCCCAGTTGAATCAAA
AGATATTTACCCTGATGGATTAACAACTATCGCTCCAATCTACGGTGGCGGTATGCGTCTTGGTTCTCTTATCATTTGGC
GTAATGATAAAGAATTTTCAGAAGATGATTTGATCCTTGTCGAAATCGCATCTACAGTAGTTGGTATCCAATTGCTTAAC
CTTCAAACTGAAAACCTTGAAGAAACAATTCGTAAACAAACAGCTGTTAACATGGCGATTAACACACTATCTTACTCAGA
AATGAAAGCAGTATCTGCTATTTTGGGTGAACTTGATGGTACAGAAGGTCGTTTGACTGCATCTGTTATCGCTGACCGTA
TTGGTATTACACGTTCTGTTATCGTTAATGCCCTACGTAAATTAGAATCAGCTGGTATCATCGAAAGCCGTTCATTGGGT
ATGAAAGGTACTTACCTTAAAGTTATCAATGAAGGTATCTTCGACAAACTTAAAGAATACAATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.9

100

0.659
  codY Bacillus subtilis subsp. subtilis str. 168

52.227

94.636

0.494