Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GO596_RS06950 Genome accession   NZ_CP046628
Coordinates   1397189..1398958 (+) Length   589 a.a.
NCBI ID   WP_157339454.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1392189..1403958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS06935 (GO596_06935) - 1392332..1393537 (+) 1206 WP_157339452.1 CCA tRNA nucleotidyltransferase -
  GO596_RS06940 (GO596_06940) - 1393534..1395402 (+) 1869 WP_157339453.1 ABC-F family ATP-binding cassette domain-containing protein -
  GO596_RS06945 (GO596_06945) rcrP 1395447..1397186 (+) 1740 WP_027968630.1 ABC transporter ATP-binding protein Regulator
  GO596_RS06950 (GO596_06950) rcrQ 1397189..1398958 (+) 1770 WP_157339454.1 ABC transporter ATP-binding protein Regulator
  GO596_RS06955 (GO596_06955) queC 1399124..1399777 (+) 654 WP_004232125.1 7-cyano-7-deazaguanine synthase QueC -
  GO596_RS06960 (GO596_06960) queD 1399777..1400223 (+) 447 WP_027968631.1 6-carboxytetrahydropterin synthase QueD -
  GO596_RS06965 (GO596_06965) queE 1400216..1400929 (+) 714 WP_157339455.1 7-carboxy-7-deazaguanine synthase QueE -
  GO596_RS06970 (GO596_06970) queF 1400944..1401435 (+) 492 WP_021142478.1 preQ(1) synthase -
  GO596_RS06975 (GO596_06975) - 1401474..1401971 (-) 498 WP_157339456.1 DUF308 domain-containing protein -
  GO596_RS06980 (GO596_06980) gdhA 1402201..1403550 (+) 1350 WP_021142476.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66263.53 Da        Isoelectric Point: 5.3923

>NTDB_id=354011 GO596_RS06950 WP_157339454.1 1397189..1398958(+) (rcrQ) [Streptococcus equinus strain CNU 77-23]
MEKRNVFLRLWDYLRNYKGSLFLAIFLKIFSGIMSVLEPFVLGLAITELTANLLDMARGVSGAHINTTYIAIILVLYFIR
GFGYEIGSYGSNFFMTKAVQKTIHDLRRDLSEKINKIPVSYFDSQQFGNVLGRFTSDVETVSNALQQSFLQIINAFVTIF
AVMFMVFYLNWKLALIIVAIIPINYFSAKFILKKSQPYFKKQADTLGDMNGFVQENLSGFNVIKLYGREEISSEEFRDIT
ENLQEVGFKASFISGIMMPVLSAISDMAYLLIAMLSALQVLAGALTIGNMQAFVQYVWQISQPVQTITQLASILQSAKSS
LERIFEVLDEPEEAAEVKEQLTHDLSGQVTFEDVSFQYTPDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTGGSIKIDGHDIRNLSRQEYRKQFGMVLQDAWLYEATIKENLRFGNLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNVSLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMEKLMHGRTSFVIAHRLSTIQDADKILVLNNGQ
IVEQGNHESLLAAKGFYYDLYNSQFAKNS

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=354011 GO596_RS06950 WP_157339454.1 1397189..1398958(+) (rcrQ) [Streptococcus equinus strain CNU 77-23]
ATGGAAAAACGAAATGTATTTTTACGTTTATGGGATTATCTCCGCAACTATAAAGGCTCACTTTTCTTAGCGATTTTTCT
TAAAATTTTTAGTGGTATCATGAGTGTGTTGGAGCCTTTCGTACTCGGACTTGCAATTACTGAATTAACAGCAAACTTAC
TTGATATGGCTCGAGGTGTTTCTGGCGCACATATCAATACAACTTATATTGCGATTATTTTGGTACTGTATTTCATTCGA
GGATTTGGTTATGAAATTGGTTCATATGGTTCAAACTTCTTTATGACTAAAGCGGTGCAAAAAACGATTCATGATTTACG
TCGTGATTTGAGTGAAAAAATCAATAAAATTCCAGTTTCATATTTTGATAGCCAACAATTTGGTAATGTTTTGGGACGTT
TCACATCTGATGTCGAAACAGTGTCAAATGCTCTTCAACAAAGTTTCTTGCAAATTATCAATGCTTTTGTAACGATTTTT
GCTGTTATGTTTATGGTTTTCTACCTTAACTGGAAATTAGCTTTGATTATTGTAGCCATTATTCCGATTAATTATTTTAG
TGCTAAGTTCATTTTGAAAAAATCTCAGCCATATTTCAAAAAACAAGCTGATACGCTTGGAGATATGAATGGTTTTGTTC
AGGAAAATCTTTCTGGTTTTAATGTCATTAAACTCTATGGTCGTGAAGAAATTTCAAGTGAAGAATTTCGAGACATTACA
GAAAATCTGCAAGAAGTAGGTTTTAAAGCCAGTTTCATTTCTGGTATTATGATGCCCGTTTTAAGTGCAATTTCAGATAT
GGCTTACTTACTCATTGCCATGCTCAGTGCGCTTCAAGTGCTAGCAGGTGCTTTGACAATTGGTAATATGCAGGCATTTG
TTCAATACGTTTGGCAAATTAGCCAGCCAGTTCAAACGATTACGCAACTGGCAAGTATTCTACAAAGTGCAAAATCGTCA
CTAGAACGTATCTTTGAAGTTCTTGATGAGCCAGAAGAAGCAGCTGAAGTCAAAGAACAATTGACTCATGATTTGTCTGG
CCAAGTCACTTTTGAGGATGTTTCTTTCCAATACACACCTGACAAACCACTCATCCGTAACTTTAATCTTGACGTCAAAC
CGGGAGAAATGGTTGCAATTGTTGGTCCAACGGGTGCTGGTAAGACAACCTTGATTAATCTGTTGATGAGATTTTACGAT
GTCACTGGTGGTTCAATTAAAATTGATGGTCATGACATTCGAAATCTATCACGTCAGGAATATCGTAAGCAGTTTGGTAT
GGTCTTACAAGATGCTTGGCTTTATGAAGCAACGATTAAAGAAAATCTCCGTTTTGGTAATCTTGATGCGACTGATGAAG
AAATTGTTGAAGCTGCTAAAGCCGCGAACGTTGACCACTTTATCCGCACCCTTCCTGGTGGATACAACATGGAAATGAAT
CAAGAATCAAGTAATGTTTCTCTTGGTCAAAAACAATTATTAACAATTGCGCGTGCTCTTTTAGCTGATCCAAAAATTTT
GATTCTGGATGAAGCGACATCTTCAGTTGATACACGATTGGAATTGCTTATCCAAAAAGCTATGGAAAAATTGATGCATG
GCAGAACAAGCTTTGTCATTGCCCATCGTTTGTCTACTATTCAAGATGCTGACAAAATTCTTGTTTTGAACAATGGTCAA
ATTGTTGAACAAGGAAATCATGAAAGTTTACTTGCTGCTAAGGGATTCTATTATGACCTTTACAATAGCCAGTTTGCTAA
AAACAGTTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.101

99.66

0.43