Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GO596_RS04535 Genome accession   NZ_CP046628
Coordinates   911478..912263 (+) Length   261 a.a.
NCBI ID   WP_021143055.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 906478..917263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS04520 (GO596_04520) - 907498..907950 (-) 453 WP_021143058.1 universal stress protein -
  GO596_RS04525 (GO596_04525) - 908280..910022 (+) 1743 WP_157339282.1 glycerophosphodiester phosphodiesterase -
  GO596_RS04530 (GO596_04530) - 910059..911273 (+) 1215 WP_045798493.1 pyridoxal phosphate-dependent aminotransferase -
  GO596_RS04535 (GO596_04535) codY 911478..912263 (+) 786 WP_021143055.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GO596_RS04540 (GO596_04540) gatC 912549..912851 (+) 303 WP_004233135.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  GO596_RS04545 (GO596_04545) gatA 912851..914317 (+) 1467 WP_024343597.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  GO596_RS04550 (GO596_04550) gatB 914317..915759 (+) 1443 WP_021143052.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  GO596_RS04555 (GO596_04555) - 915933..916844 (+) 912 WP_157339283.1 DMT family transporter -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28891.01 Da        Isoelectric Point: 4.4574

>NTDB_id=353995 GO596_RS04535 WP_021143055.1 911478..912263(+) (codY) [Streptococcus equinus strain CNU 77-23]
MPNLLEKTRKITSILQRSVDSLDTELPYNTMAAQLADIIDCNSCIINGGGNLLGYAMKYKTNTDRVEEFFQAKQFPEEYV
KAASRVYDTEANLSVDNDLTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDKEFSEDDLILVEIASTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVSAILGELDGTEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=353995 GO596_RS04535 WP_021143055.1 911478..912263(+) (codY) [Streptococcus equinus strain CNU 77-23]
ATGCCGAATTTATTAGAAAAAACTAGAAAGATTACGTCAATTTTGCAACGCTCAGTTGATAGCCTTGATACCGAATTACC
ATATAACACAATGGCTGCTCAACTTGCTGACATCATTGACTGTAACTCTTGCATCATCAACGGAGGAGGAAACCTTCTTG
GTTATGCAATGAAGTATAAAACAAATACTGACCGCGTTGAAGAATTCTTTCAAGCGAAACAATTCCCTGAAGAATACGTA
AAAGCGGCTAGTCGTGTTTACGATACTGAAGCTAACTTGTCTGTAGATAATGATTTGACAATCTTCCCAGTTGAATCAAA
AGATATTTACCCTGATGGATTAACAACTATCGCTCCAATCTACGGTGGCGGTATGCGTCTTGGTTCTCTTATCATTTGGC
GTAATGATAAAGAATTTTCAGAAGATGATTTGATTCTTGTCGAAATCGCCTCTACAGTAGTTGGTATCCAATTACTTAAC
CTTCAAACTGAAAACCTTGAAGAAACAATTCGTAAACAAACAGCTGTTAACATGGCGATTAACACACTATCTTACTCAGA
AATGAAAGCAGTATCTGCTATTTTGGGTGAACTTGATGGTACAGAAGGTCGTTTGACTGCATCTGTTATCGCTGACCGTA
TTGGTATTACACGTTCTGTTATCGTTAATGCCCTACGTAAATTGGAATCAGCTGGTATCATCGAAAGCCGTTCATTGGGT
ATGAAAGGTACTTACCTTAAAGTTATCAATGAAGGTATCTTCGACAAACTTAAAGAATACAATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.9

100

0.659
  codY Bacillus subtilis subsp. subtilis str. 168

52.227

94.636

0.494