Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   GO596_RS04230 Genome accession   NZ_CP046628
Coordinates   842948..845410 (-) Length   820 a.a.
NCBI ID   WP_157339260.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 837948..850410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS04210 (GO596_04210) - 838020..838457 (-) 438 WP_157339259.1 GNAT family N-acetyltransferase -
  GO596_RS04215 (GO596_04215) pflB 838518..840842 (-) 2325 WP_021143135.1 formate C-acetyltransferase -
  GO596_RS04220 (GO596_04220) dinB 841065..842162 (+) 1098 WP_021143134.1 DNA polymerase IV -
  GO596_RS04225 (GO596_04225) - 842212..842706 (-) 495 WP_027968357.1 hypothetical protein -
  GO596_RS04230 (GO596_04230) recD/recD2/recDB 842948..845410 (-) 2463 WP_157339260.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GO596_RS04235 (GO596_04235) lepB 845522..846115 (-) 594 WP_157339261.1 signal peptidase I -
  GO596_RS04240 (GO596_04240) rnhC 846131..847030 (-) 900 WP_074483811.1 ribonuclease HIII -
  GO596_RS04245 (GO596_04245) - 847151..847459 (+) 309 WP_004233227.1 hypothetical protein -
  GO596_RS04250 (GO596_04250) - 847465..848013 (+) 549 WP_027968361.1 CvpA family protein -

Sequence

Protein


Download         Length: 820 a.a.        Molecular weight: 92403.53 Da        Isoelectric Point: 4.3569

>NTDB_id=353989 GO596_RS04230 WP_157339260.1 842948..845410(-) (recD/recD2/recDB) [Streptococcus equinus strain CNU 77-23]
MEYFFSGIVERIIFENASNFFKIVLLEIEDTDSDFDDFEIIVTGTMAEIIEGENYTFWGELTQHPKYGEQLKLTRYERSK
PSSSGLIKYFSSEHFKGIGKKTAEKIVQLYGEDTIDKILEDPSKLDSISGLSKENRDNFVAKLKLNYGTEQILAKLAEYG
LTNRVAFEIFNQYKEESLDIIQENPYQLVEDIQGIGFKIADQLAEQLGIEADSPQRFRAALVHTLFELSVENGDTYVEAR
DLLENAITILEEARQIELDPAAVAKELSTLIAEDKVQNIGTKIFDNTLFYAEAGIKKHLTRILDTPLSKQFSAEELEEEI
AEVEVNFGISYDQVQKDAIKNALQSKVFILTGGPGTGKTTVINGLIETYAALHRIDLEKKDIPIILAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMDDYLDCDLIIIDEFSMVDTWLANQLFSSISSNTQVIIVGDSDQLPSVGPGQVLADLL
KIKELPQLALTKIFRQSEDSTIVTLANQMKQGILPADFTQKKADRSYFEASAQYIPEMIPKIVSAAIKSGISPQEIQILA
PMYRGAAGINRLNTIIQDLLNPLGDQLSFAFGEMNFRKGDKVLHLINDAELNVFNGDIGYITDLIPAKYTESKQDELFMS
FDGTEVSYPRNEWHKITLAYAMSIHKSQGSEFQVVILPITRQSHRLLQRNLIYTAITRSKSKLVMLGEIAAFDYAIKNEG
AKRNTYLVERFTGDEELLEMDSSENITDSEIQEQETTKSIPSNFEEENSSKKAEQLSLDIEEELETEEPKIYRLTEENMA
FIDPMIGITQADIEQFFKRS

Nucleotide


Download         Length: 2463 bp        

>NTDB_id=353989 GO596_RS04230 WP_157339260.1 842948..845410(-) (recD/recD2/recDB) [Streptococcus equinus strain CNU 77-23]
ATGGAATACTTCTTTTCTGGCATTGTTGAGCGTATTATTTTTGAAAATGCCAGTAACTTTTTTAAAATCGTACTACTCGA
AATCGAAGATACTGACTCTGATTTCGATGATTTTGAAATCATTGTCACAGGGACAATGGCTGAAATCATTGAAGGAGAAA
ATTATACTTTCTGGGGTGAATTGACCCAGCATCCAAAATACGGTGAGCAGCTTAAACTCACGCGCTACGAGCGTTCAAAG
CCAAGCTCATCTGGATTGATTAAATATTTTTCAAGCGAGCACTTTAAAGGGATTGGTAAAAAAACTGCTGAAAAAATTGT
ACAACTCTACGGCGAAGACACCATCGATAAAATCCTAGAAGACCCAAGTAAACTCGACAGTATTTCAGGACTTTCTAAGG
AAAATCGTGATAATTTTGTTGCCAAATTAAAACTCAATTATGGTACAGAGCAAATCCTTGCCAAACTTGCTGAGTATGGG
TTGACTAACCGTGTGGCTTTTGAGATTTTTAACCAGTACAAGGAAGAAAGCCTTGATATTATCCAAGAAAATCCTTATCA
ACTCGTTGAAGACATCCAAGGGATTGGTTTTAAAATAGCTGACCAACTGGCTGAGCAGTTAGGCATCGAAGCAGATTCGC
CACAACGTTTTCGTGCGGCACTTGTCCACACATTATTCGAACTTTCTGTGGAAAACGGCGATACTTATGTCGAGGCGCGT
GATTTATTAGAAAATGCCATCACTATTCTTGAAGAAGCACGACAAATCGAACTTGACCCCGCAGCTGTCGCTAAAGAGTT
ATCCACACTTATTGCTGAAGACAAGGTGCAGAATATCGGTACTAAGATTTTTGACAACACGCTCTTTTATGCTGAAGCAG
GTATCAAAAAACATTTGACGCGTATCCTTGATACCCCACTGTCTAAGCAATTTTCAGCCGAAGAGCTGGAAGAAGAAATC
GCTGAAGTCGAAGTAAATTTTGGGATTTCTTATGACCAAGTGCAAAAAGATGCCATCAAAAATGCCCTGCAAAGCAAAGT
CTTTATTCTAACTGGTGGACCTGGGACAGGAAAAACGACCGTTATCAACGGTTTAATTGAAACCTATGCTGCTCTACACC
GCATTGACCTTGAGAAAAAAGATATTCCAATCATTCTAGCAGCTCCAACTGGTCGTGCAGCCCGTCGTATGAACGAATTG
ACTGGCTTACCAAGTGCCACGATTCACCGCCATCTTGGTTTAAATGGCGATAATGACTATCAAGCTATGGATGATTATCT
TGATTGTGACTTGATTATCATCGATGAGTTTTCAATGGTCGATACATGGCTTGCTAACCAACTGTTTAGCTCTATTTCAT
CAAATACTCAAGTTATCATCGTCGGAGATAGCGACCAATTGCCTTCGGTAGGACCTGGACAAGTTTTGGCAGATTTATTG
AAAATCAAAGAATTGCCGCAATTAGCACTGACAAAAATCTTCAGGCAGTCCGAAGATTCAACTATCGTCACCCTAGCTAA
TCAAATGAAACAAGGCATCTTGCCAGCTGATTTCACACAAAAAAAAGCTGACCGCTCTTATTTTGAAGCTAGCGCCCAAT
ACATTCCTGAAATGATTCCAAAAATTGTCAGCGCAGCTATTAAAAGTGGTATCAGCCCACAAGAAATTCAAATCCTTGCC
CCCATGTACCGCGGAGCAGCTGGGATTAATCGCCTTAATACGATTATCCAAGATTTGTTAAACCCACTCGGTGACCAATT
GTCATTTGCTTTTGGTGAGATGAATTTCCGTAAAGGAGACAAGGTTCTCCACCTCATCAACGACGCCGAACTCAATGTCT
TTAACGGTGATATCGGCTATATTACTGACCTTATTCCTGCCAAATACACCGAGTCTAAGCAAGACGAGCTGTTTATGTCT
TTTGATGGTACTGAAGTGAGCTATCCTCGTAACGAATGGCATAAAATCACACTGGCTTACGCCATGTCTATCCACAAATC
TCAAGGTAGCGAATTTCAGGTTGTTATTCTGCCAATCACACGTCAGAGTCACCGACTCTTGCAGCGTAACCTTATCTATA
CTGCCATTACACGCTCAAAAAGTAAGCTAGTCATGCTGGGAGAAATTGCTGCCTTTGACTACGCGATTAAAAACGAAGGT
GCTAAACGCAACACTTACCTCGTCGAGCGTTTCACAGGAGACGAAGAACTCCTTGAAATGGATTCTTCCGAGAACATCAC
TGATTCTGAAATTCAAGAACAAGAAACAACTAAAAGTATTCCTTCAAATTTCGAAGAAGAAAATTCGTCTAAAAAAGCTG
AACAACTCAGCTTGGATATTGAGGAAGAACTTGAAACTGAAGAGCCAAAAATTTATCGCCTAACAGAAGAAAATATGGCA
TTTATCGATCCAATGATTGGTATCACCCAAGCAGATATTGAACAATTTTTTAAACGTTCATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

AAA domain (AAA_30)

(331-517)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-635)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.895

92.683

0.398