Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   GO602_RS27825 Genome accession   NZ_CP046602
Coordinates   5981918..5983702 (+) Length   594 a.a.
NCBI ID   WP_058140501.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CMC-115     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5976918..5988702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO602_RS27805 (GO602_27780) argE 5977158..5978312 (-) 1155 WP_024917728.1 acetylornithine deacetylase -
  GO602_RS27810 (GO602_27785) - 5978412..5979680 (-) 1269 WP_024917729.1 inorganic phosphate transporter -
  GO602_RS27815 (GO602_27790) - 5979725..5980402 (-) 678 WP_024917730.1 TIGR00153 family protein -
  GO602_RS27820 (GO602_27795) - 5980516..5981880 (+) 1365 WP_024917731.1 inorganic triphosphatase -
  GO602_RS27825 (GO602_27800) pilB 5981918..5983702 (+) 1785 WP_058140501.1 GspE/PulE family protein Machinery gene
  GO602_RS27830 (GO602_27805) - 5983924..5984385 (+) 462 WP_024917642.1 NfeD family protein -
  GO602_RS27835 (GO602_27810) - 5984508..5984837 (+) 330 WP_024917643.1 DUF2388 domain-containing protein -
  GO602_RS27840 (GO602_27815) gcvP 5984872..5987748 (-) 2877 WP_024917644.1 aminomethyl-transferring glycine dehydrogenase -
  GO602_RS27845 (GO602_27820) gcvH 5987922..5988311 (-) 390 WP_003107397.1 glycine cleavage system protein GcvH -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 65983.58 Da        Isoelectric Point: 6.5094

>NTDB_id=353913 GO602_RS27825 WP_058140501.1 5981918..5983702(+) (pilB) [Pseudomonas aeruginosa strain CMC-115]
MSVFATAAQDRLLDLGDLLRELVAQGRVGQDQAEQCLAIRRSAVRNQQHPLEFLAAQQVEDLKRPGRKLDLETLTQWLAE
YAGQPYLRIDPLKIDVAAVTPLMSYAFAQRHGILAVAVSPEEVTIASAQPFVQGWESNLVHVLKRPIKRVVANPADIQRY
TVEFFRLARSVSGATSPDQKISGVGNFEQLLNLGAADQEPDANDAHIVTIVDWLFQYAFQQRASDIHIEPRREQGTVRFR
IDGVLHNVYQFPPQVTMAVVSRLKSLGRMNVAEKRKPQDGRVKTKTPDGAEVELRLSTLPTAFGEKMVMRIFDPEVLLKS
FDQLGFSADDLRRWQSMTSQPNGIILVTGPTGSGKTTTLYTTLKQLATDEVNVCTIEDPIEMIEPSFNQMQVQHNIDLTF
ASGVRALLRQDPDIIMVGEIRDLETAEMAIQAALTGHLVLSTLHTNDSPTAITRLLELGVPYYLIRATVLGVMAQRLVRT
LCPHCKTPMQLADSDWHELTRPWSAPPPSGAHQAVGCLECRDTGYRGRAGVYEIMLLSDSLKELITADTDLVALRRQAYK
EGTRSLRLSGAQKVAAGLSTLEEVLRVTPQSEQK

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=353913 GO602_RS27825 WP_058140501.1 5981918..5983702(+) (pilB) [Pseudomonas aeruginosa strain CMC-115]
ATGTCCGTGTTCGCCACCGCCGCCCAGGACCGCCTGCTGGACCTGGGCGACCTGCTCCGCGAGCTGGTCGCCCAGGGCCG
GGTCGGGCAGGACCAGGCCGAACAGTGCCTGGCGATCCGCCGCAGCGCGGTGCGCAACCAGCAGCATCCGCTGGAGTTCC
TCGCCGCGCAGCAGGTCGAGGATCTCAAGCGTCCCGGACGCAAGCTCGACCTGGAGACCCTCACCCAATGGCTGGCCGAG
TACGCCGGCCAGCCCTACCTGCGCATCGACCCGCTGAAGATCGACGTCGCCGCGGTGACTCCGCTGATGTCCTACGCCTT
CGCCCAGCGCCATGGCATCCTCGCCGTTGCGGTGAGTCCGGAGGAAGTCACCATCGCCAGCGCCCAACCCTTCGTGCAGG
GCTGGGAAAGCAACCTGGTGCATGTGCTCAAGCGACCGATCAAGCGGGTGGTGGCGAACCCGGCGGACATCCAGCGCTAC
ACCGTCGAGTTCTTCCGCCTGGCCCGCTCGGTCAGCGGCGCCACCTCGCCGGACCAGAAGATCAGTGGCGTCGGCAACTT
CGAGCAGTTGCTCAACCTCGGCGCCGCCGACCAGGAGCCGGACGCCAACGACGCGCACATCGTCACCATCGTCGACTGGC
TGTTCCAGTACGCCTTCCAGCAGCGCGCCAGCGACATCCACATCGAGCCGCGCCGCGAGCAGGGTACGGTGCGCTTCCGT
ATCGACGGCGTGCTGCACAACGTCTACCAGTTCCCGCCGCAGGTGACCATGGCGGTGGTCAGCCGCCTGAAGTCGCTGGG
ACGGATGAACGTGGCGGAGAAACGCAAGCCGCAGGACGGCCGGGTCAAGACCAAGACCCCGGACGGCGCCGAGGTGGAGC
TGCGCCTGTCGACCCTGCCCACCGCCTTCGGCGAGAAGATGGTGATGCGCATCTTCGACCCCGAGGTGCTGCTCAAGAGC
TTCGACCAGCTCGGCTTCTCCGCCGACGACCTGCGCCGCTGGCAGAGCATGACCAGCCAGCCCAACGGCATCATCCTGGT
CACCGGTCCCACCGGCTCGGGCAAGACCACCACGCTCTACACCACGCTCAAGCAACTGGCTACCGACGAGGTGAACGTCT
GCACCATCGAGGACCCGATCGAGATGATCGAGCCCTCGTTCAACCAGATGCAGGTCCAGCACAACATCGACCTGACCTTC
GCCAGCGGCGTACGCGCCCTGCTGCGGCAGGACCCGGACATCATCATGGTCGGCGAGATCCGCGACCTGGAGACCGCCGA
GATGGCGATCCAGGCGGCGCTCACCGGGCACCTGGTGCTCTCCACCCTGCACACCAACGACTCGCCCACGGCGATCACCC
GCCTGCTCGAACTGGGCGTGCCCTACTACCTGATCCGCGCCACCGTGCTCGGGGTCATGGCCCAACGCCTGGTGCGCACG
CTCTGCCCGCACTGCAAGACGCCGATGCAACTGGCGGACAGCGACTGGCACGAACTGACCCGCCCCTGGAGCGCCCCGCC
GCCCAGCGGCGCACACCAGGCCGTGGGTTGCCTGGAGTGCCGCGACACCGGCTATCGCGGGCGCGCCGGCGTCTATGAAA
TCATGCTGCTCAGCGATAGCCTGAAAGAACTGATCACCGCCGACACCGACCTGGTCGCCCTGCGCCGCCAGGCCTACAAG
GAAGGCACCCGCAGCCTGCGCCTGTCCGGTGCACAGAAGGTCGCCGCGGGTCTCAGTACGCTGGAGGAGGTACTGCGGGT
GACCCCGCAGAGCGAACAGAAGTAG

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(216-480)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(69-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.682

90.067

0.375