Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GO602_RS26940 Genome accession   NZ_CP046602
Coordinates   5789478..5790077 (-) Length   199 a.a.
NCBI ID   WP_024916550.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CMC-115     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5784478..5795077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO602_RS26920 (GO602_26895) aroK 5785609..5786127 (-) 519 WP_003095833.1 shikimate kinase AroK -
  GO602_RS26925 (GO602_26900) pilQ 5786139..5788283 (-) 2145 WP_024916548.1 type 4a pilus secretin PilQ Machinery gene
  GO602_RS26930 (GO602_26905) comL/pilP 5788337..5788861 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  GO602_RS26935 (GO602_26910) pilO 5788858..5789481 (-) 624 WP_024916549.1 type 4a pilus biogenesis protein PilO Machinery gene
  GO602_RS26940 (GO602_26915) pilN 5789478..5790077 (-) 600 WP_024916550.1 type 4a pilus biogenesis protein PilN Machinery gene
  GO602_RS26945 (GO602_26920) pilM 5790077..5791141 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  GO602_RS26950 (GO602_26925) - 5791326..5793797 (+) 2472 WP_124129060.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22288.62 Da        Isoelectric Point: 10.3054

>NTDB_id=353907 GO602_RS26940 WP_024916550.1 5789478..5790077(-) (pilN) [Pseudomonas aeruginosa strain CMC-115]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGRNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEANAKAKNGVAQGAKK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=353907 GO602_RS26940 WP_024916550.1 5789478..5790077(-) (pilN) [Pseudomonas aeruginosa strain CMC-115]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTCGGCGG
TGTCCTGGTGGCATCGGCGGCGCTGGTGTTCCTTGGCGACCAGTATTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGATTTCCTGCGCAAGGAAATCGTCGTGCTCGATGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGACGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCGATCATCGGTCGGGTGTTCGACCAGCTCGTACG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAGGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGATGCGTCCGAATGGCTGACCGCGCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAGCTGACCGTGCAGCAGACGCAGCCCGGCGAGGAGGCGAACGC
CAAGGCGAAGAATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

87.94

0.367