Detailed information NTG0353899

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: GO602_RS24420
• Genome accession: NZ_CP046602
• Coordinates: 5225999..5226424 (+)
• Length: 141 a.a.
• NCBI ID: WP_024914644.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain CMC-115
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5220999..5231424

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO602_RS24405 (GO602_24380)	pilX	5221569..5222156 (+)	588	WP_003112826.1	type 4a pilus minor pilin PilX	-
GO602_RS24410 (GO602_24385)	pilY1	5222168..5225653 (+)	3486	WP_024914646.1	type 4a pilus biogenesis protein PilY1	-
GO602_RS24415 (GO602_24390)	pilY2	5225655..5226002 (+)	348	WP_024914645.1	type 4a fimbrial biogenesis protein PilY2	-
GO602_RS24420 (GO602_24395)	comF	5225999..5226424 (+)	426	WP_024914644.1	type 4a pilus minor pilin PilE	Machinery gene
GO602_RS24425 (GO602_24400)	ispH	5226469..5227413 (-)	945	WP_003134939.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
GO602_RS24430 (GO602_24405)	fkpB	5227499..5227939 (-)	441	WP_024914643.1	FKBP-type peptidyl-prolyl cis-trans isomerase	-
GO602_RS24435 (GO602_24410)	lspA	5227932..5228441 (-)	510	WP_058139803.1	signal peptidase II	-
GO602_RS24440 (GO602_24415)	ileS	5228434..5231265 (-)	2832	WP_024914641.1	isoleucine--tRNA ligase	-

Sequence

Protein

• Length: 141 a.a.
• Molecular weight: 15338.37 Da
• Isoelectric Point: 9.8393

>NTDB_id=353899 GO602_RS24420 WP_024914644.1 5225999..5226424(+) (comF) [Pseudomonas aeruginosa strain CMC-115]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDVAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYSLTIETPTSTTYTLTATPINSQTRDKSCGKLTLNQLGERGAAGKTGNNTTVNDCWR

Nucleotide

• Length: 426 bp

>NTDB_id=353899 GO602_RS24420 WP_024914644.1 5225999..5226424(+) (comF) [Pseudomonas aeruginosa strain CMC-115]
ATGAGGACAAGACAGAAGGGCTTCACATTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATCCCGAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGTGGCCGCGCGCC
AGGAGCGCTATTACTCGCAGAATCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTCTACAGCCTCACCATAGAGACCCCGACCAGCACCACCTACACTCTGACCGCGACCCCAATCAATTCGCA
GACGCGCGACAAGTCCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
CCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (29-117)

• Prokaryotic N-terminal methylation motif (N_methyl) (3-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Acinetobacter baylyi ADP1	39.31	100	0.404