Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GO005_RS06415 Genome accession   NZ_CP046592
Coordinates   1239456..1240373 (+) Length   305 a.a.
NCBI ID   WP_015715665.1    Uniprot ID   -
Organism   Bacillus subtilis strain TR21     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1234456..1245373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO005_RS06400 (GO005_06385) trpS 1235035..1236027 (-) 993 WP_015483084.1 tryptophan--tRNA ligase -
  GO005_RS06405 (GO005_06390) oppA 1236772..1238409 (+) 1638 WP_003232957.1 oligopeptide ABC transporter substrate-binding protein OppA -
  GO005_RS06410 (GO005_06395) oppB 1238517..1239452 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  GO005_RS06415 (GO005_06400) amiD 1239456..1240373 (+) 918 WP_015715665.1 oligopeptide ABC transporter permease OppC Regulator
  GO005_RS06420 (GO005_06405) oppD 1240378..1241454 (+) 1077 WP_074794192.1 oligopeptide ABC transporter ATP-binding protein OppD -
  GO005_RS06425 (GO005_06410) oppF 1241456..1242373 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  GO005_RS06430 (GO005_06415) yjbB 1242481..1243698 (+) 1218 WP_074794275.1 MFS transporter -
  GO005_RS06435 (GO005_06420) yjbC 1243863..1244441 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  GO005_RS06440 (GO005_06425) spx 1244622..1245017 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33607.10 Da        Isoelectric Point: 10.2873

>NTDB_id=353719 GO005_RS06415 WP_015715665.1 1239456..1240373(+) (amiD) [Bacillus subtilis strain TR21]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICVTMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=353719 GO005_RS06415 WP_015715665.1 1239456..1240373(+) (amiD) [Bacillus subtilis strain TR21]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGACATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGGCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAACATGGCCAGAATCGTGCGTGG
ACAAGTGCTGCAGCTGAAGAATCAAGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTGCTTTTTA
AACATATCGTGCCAAACGCAATGGGTTCCATTTTGGTCACGATGACATTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCGTTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGATGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364