Detailed information NTG0353670

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: GO004_RS21330
• Genome accession: NZ_CP046591
• Coordinates: 4112806..4114071 (-)
• Length: 421 a.a.
• NCBI ID: WP_015714437.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain R31
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4107806..4119071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO004_RS21305 (GO004_21300)	yrzK	4108046..4108216 (+)	171	WP_004399157.1	YrzK family protein	-
GO004_RS21310 (GO004_21305)	hisS	4108598..4109872 (+)	1275	WP_032722254.1	histidine--tRNA ligase	-
GO004_RS21315 (GO004_21310)	aspS	4109886..4111664 (+)	1779	WP_032722253.1	aspartate--tRNA ligase	-
GO004_RS21325 (GO004_21320)	tcdA	4112000..4112764 (+)	765	WP_032722252.1	tRNA threonylcarbamoyladenosine dehydratase	-
GO004_RS21330 (GO004_21325)	rarA	4112806..4114071 (-)	1266	WP_015714437.1	replication-associated recombination protein A	Machinery gene
GO004_RS21335 (GO004_21330)	cymR	4114274..4114690 (+)	417	WP_003225879.1	cysteine metabolism transcriptional regulator CymR	-
GO004_RS21340 (GO004_21335)	iscSA	4114709..4115848 (+)	1140	WP_032722251.1	cysteine desulfurase family protein	-
GO004_RS21345 (GO004_21340)	mnmA	4115879..4116994 (+)	1116	WP_004398509.1	tRNA 2-thiouridine(34) synthase MnmA	-
GO004_RS21350 (GO004_21345)	yrrB	4117080..4117700 (+)	621	WP_202926392.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 46500.35 Da
• Isoelectric Point: 7.2043

>NTDB_id=353670 GO004_RS21330 WP_015714437.1 4112806..4114071(-) (rarA) [Bacillus subtilis strain R31]
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
IVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALER
ALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAV
IELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHYKGAQELGRGIDYKYPHNYDNGWVEQQYLPDPLKNKQYYKP
KQTGKFESALKQVYDKLMKRK

Nucleotide

• Length: 1266 bp

>NTDB_id=353670 GO004_RS21330 WP_015714437.1 4112806..4114071(-) (rarA) [Bacillus subtilis strain R31]
ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTATCGGCCAGCAGCATCTGGTGGCTGAAGATAA
AATTATTGGCAGAATGGTCCAGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTGGAAAAACATCAA
TCGCAACAGCAATCGCCGGTTCAACAAGTATTGCTTTTCGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAA
ATCGTAGCTCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAGTCCACAGGCTGGATAAAGGAAAACA
GGATTTTCTATTACCCTATTTAGAAAACGGAATGATCATTTTGATCGGAGCAACGACGGCTAACCCGTATCATGCCATTA
ATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAACCGTTAACACCTGATCTGATTAAACAGGCACTGGAACGT
GCGCTCCATGATGAGCATCGGGGCCTTGGCACCTATTCTGTATCCATTGATGATCAGGCGATGGAGCATTTTGCCCACGG
ATGCGGAGGAGATGTCCGCTCCGCTTTAAATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAGACGGTGAAA
TTCACATTACATTAGAAACCGCGGAAGAATGCTTGCAGAAAAAAAGCTTTTCTCACGATAAAGATGGTGACGCGCATTAT
GATGTACTGTCCGCTTTTCAAAAATCGATCCGCGGCTCTGATGCCAACGCTGCTCTTCACTATTTGGCTAGATTAATTGA
AGCCGGTGATCTGGAGAGCATCGCAAGACGATTGCTTGTTATCGCCTATGAAGATATCGGTTTAGCAAGCCCGCAAGCCG
GCCCTAGAGTGCTGAACGCTATTCAGACCGCTGAGCGAGTCGGGTTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTT
ATTGAGCTTTGCCTCTCACCGAAATCAAACTCTGCCATTCTGGCAATCGATGAGGCCCTGGCAGATATCAGAGCCGGAAA
AATTGGGGATGTCCCGAAGCATTTAAAAGACGCGCATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAAT
ACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCG
AAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	99.762	100	0.998