Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   GOQ08_RS06040 Genome accession   NZ_CP046549
Coordinates   1281156..1282913 (+) Length   585 a.a.
NCBI ID   WP_001020911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 19WIARLN022_full     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1276156..1287913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOQ08_RS06020 (GOQ08_05980) - 1277057..1277926 (+) 870 WP_000117596.1 PhzF family phenazine biosynthesis protein -
  GOQ08_RS06025 (GOQ08_05985) - 1277980..1278759 (-) 780 WP_000718711.1 ferredoxin--NADP reductase -
  GOQ08_RS06030 (GOQ08_05990) tsaA 1278864..1279592 (+) 729 WP_001985377.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  GOQ08_RS06035 (GOQ08_05995) - 1279599..1280867 (-) 1269 WP_001052946.1 DUF4010 domain-containing protein -
  GOQ08_RS06040 (GOQ08_06000) pilB 1281156..1282913 (+) 1758 WP_001020911.1 GspE/PulE family protein Machinery gene
  GOQ08_RS06045 (GOQ08_06005) - 1282995..1283354 (+) 360 WP_000783090.1 NirD/YgiW/YdeI family stress tolerance protein -
  GOQ08_RS06050 (GOQ08_06010) - 1283462..1284124 (+) 663 WP_001221450.1 response regulator transcription factor -
  GOQ08_RS06055 (GOQ08_06015) - 1284121..1285479 (+) 1359 WP_001257354.1 cell wall metabolism sensor histidine kinase WalK -
  GOQ08_RS06060 (GOQ08_06020) hemP 1285545..1285715 (-) 171 WP_000993415.1 hemin uptake protein HemP -
  GOQ08_RS06065 (GOQ08_06025) - 1285852..1286751 (+) 900 WP_001125733.1 thiamine phosphate synthase -
  GOQ08_RS06070 (GOQ08_06030) - 1286773..1287324 (-) 552 WP_000913439.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66843.63 Da        Isoelectric Point: 7.0339

>NTDB_id=353324 GOQ08_RS06040 WP_001020911.1 1281156..1282913(+) (pilB) [Acinetobacter baumannii strain 19WIARLN022_full]
MNIHVEIDTHWCLEQLLQEGRITERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFADRAQLPL
FVIDPLKADVSALTQVMSQEFAIRNHILAVEVHADRIVIGTDQPFQTDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDAAHDRDNKGVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSASDIHMEPRKENGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPIEMLEPSFNQMQVNHAIELGFADGVRA
LMRQDPDIIMIGEIRDQDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLGVQPFLTAATILGVLAQRLVRKLCPHCK
QQTHINEDEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMPVSLELKHLISSHATLNELRSQTKKESVEPL
RIAGARKVIEGLTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=353324 GOQ08_RS06040 WP_001020911.1 1281156..1282913(+) (pilB) [Acinetobacter baumannii strain 19WIARLN022_full]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCACTGAACGAGATAA
GTTACTTGTACAAACCACAAATAGGCAAAAAGATCAGTTGAAATGGCATCCATTACAATGGATTGCGCATTTTAATTTAA
AAGACCAACACCATGTACAAGCACATTTAAGTTTAAACCGTCTGTGCCAATGGTTTGCAGATCGGGCGCAATTACCTTTA
TTTGTGATTGATCCTTTAAAGGCAGATGTGAGTGCTTTAACTCAAGTCATGTCGCAAGAGTTTGCGATCCGTAATCATAT
TTTAGCTGTAGAAGTCCATGCGGACCGAATTGTGATAGGAACAGACCAGCCTTTTCAAACAGACTGGCTAAATAATCTAG
AGAAGAGTTTAGCACCAAAAAAAATTGAACGTGTATTTCTCAACCCCGAGCAATTACAACGTTATTTACGAGAATATTAT
CAAGTCAGCCGAGCAGTAAACTCAGCTCAAAAAGATGCGGCTCATGACCGTGATAACAAAGGTGTAGAGGCGCTTTTACA
ACTTGGCGATAGCCAAAATCCTGATGCCAATGATCAGCATATTGTGAAATTGGTCGACTGGATTTTGCAATTTGCATTTG
AACAGAGCGCTAGTGACATTCACATGGAACCACGTAAAGAAAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAACATGCCTTCAAATACTCTGACCGCGGTGATTTCTCGGATTAAAATTTTAGGGCGGCTAAATGTAGCAGA
AAAGCGTAAACCGCAAGATGGTCGTTTAAAAACACGTACACCGAAAGGCCAAGAAACCGAACTACGTCTATCTACCTTAC
CAACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTGTTAGTACGTTCCTTTCAGCAATTGGGTTTT
GACCAGTCTTTATTACAGCAATGGCAGCGTATTACGCAAAATAGTCACGGTATTATTTTAGTTACGGGGCCAACAGGTTC
TGGTAAAACCACAACTCTATATTCTTCTTTAAAACAGCTTGCAACCGAGCAGGTCAATGTCTGTACCATTGAAGATCCGA
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTCAATCATGCAATTGAACTGGGCTTTGCAGATGGTGTACGTGCG
CTTATGCGACAAGACCCAGACATTATTATGATTGGGGAAATTCGTGACCAAGATACTGCGAATATGGCCATTCAAGCTGC
ACTCACCGGCCATTTAGTATTATCAACTTTACACACCAATGATGCGCCGTCTAGTTTGACCCGTTTACATGATTTAGGTG
TACAACCATTTTTAACAGCCGCGACTATTTTAGGTGTATTAGCGCAGCGCTTAGTGCGTAAGCTTTGCCCGCACTGCAAA
CAACAAACTCATATTAATGAAGATGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCTGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGCCAGTTAGTCTTG
AGCTTAAGCATCTTATTAGCAGTCATGCGACATTAAATGAATTAAGAAGCCAAACTAAAAAAGAAAGTGTAGAGCCTTTA
AGAATTGCAGGAGCTCGCAAAGTTATTGAAGGTTTGACCACCTTGGAAGAGGTGCTGCGGGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)

Type II/IV secretion system protein (T2SSE)

(209-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.162

100

0.376