Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   GOD87_RS11750 Genome accession   NZ_CP046536
Coordinates   2480049..2481806 (-) Length   585 a.a.
NCBI ID   WP_057094683.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XL380     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2475049..2486806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOD87_RS11720 (GOD87_11720) - 2475638..2476189 (+) 552 WP_000913439.1 tetratricopeptide repeat protein -
  GOD87_RS11725 (GOD87_11725) - 2476208..2477110 (-) 903 WP_057094679.1 NUDIX domain-containing protein -
  GOD87_RS11730 (GOD87_11730) hemP 2477247..2477417 (+) 171 WP_000993415.1 hemin uptake protein HemP -
  GOD87_RS11735 (GOD87_11735) - 2477483..2478841 (-) 1359 WP_057094681.1 sensor histidine kinase -
  GOD87_RS11740 (GOD87_11740) - 2478838..2479500 (-) 663 WP_001221454.1 response regulator transcription factor -
  GOD87_RS11745 (GOD87_11745) - 2479608..2479967 (-) 360 WP_000783090.1 NirD/YgiW/YdeI family stress tolerance protein -
  GOD87_RS11750 (GOD87_11750) pilB 2480049..2481806 (-) 1758 WP_057094683.1 GspE/PulE family protein Machinery gene
  GOD87_RS11755 (GOD87_11755) - 2482094..2483362 (+) 1269 WP_156580603.1 MgtC/SapB family protein -
  GOD87_RS11760 (GOD87_11760) tsaA 2483369..2484097 (-) 729 WP_079745774.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  GOD87_RS11765 (GOD87_11765) - 2484202..2484981 (+) 780 WP_000718711.1 ferredoxin--NADP reductase -
  GOD87_RS11770 (GOD87_11770) - 2485036..2485905 (-) 870 WP_057094597.1 PhzF family phenazine biosynthesis protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66832.64 Da        Isoelectric Point: 7.0124

>NTDB_id=353103 GOD87_RS11750 WP_057094683.1 2480049..2481806(-) (pilB) [Acinetobacter baumannii strain XL380]
MNIHVEIDTHWCLEQLLQEGRITERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFADRAQLPL
FVIDPLKADVSALTQVMSQEFAIRNHILAVEVHADRIVIGTDQPFQIDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDAAHDRDNKGVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSASDIHMEPRKDNGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPIEMLEPSFNQMQVNHAIELGFADGVRA
LMRQDPDIIMIGEIRDQDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLGIQPFLTAATILGVLAQRLVRKLCPNCK
QQTHINEDEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMPVSLELKHLISSHATLNELRSQTKKESVEPL
RIAGARKVIEGLTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=353103 GOD87_RS11750 WP_057094683.1 2480049..2481806(-) (pilB) [Acinetobacter baumannii strain XL380]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCACTGAACGAGATAA
GTTACTTGTACAAACCACAAATAGGCAAAAAGATCAGTTGAAATGGCATCCATTACAGTGGATTGCGCATTTTAATTTAA
AAGACCAACATCATGTACAAGCACATTTAAGTTTAAACCGTCTCTGCCAATGGTTTGCAGATCGGGCGCAATTACCTTTA
TTTGTGATTGATCCTTTAAAGGCAGATGTGAGTGCTTTAACTCAAGTCATGTCGCAAGAGTTTGCGATCCGTAATCATAT
TTTAGCTGTAGAAGTCCATGCGGACCGGATTGTGATAGGAACAGACCAGCCTTTTCAAATAGACTGGCTAAATAATTTAG
AGAAGAGTTTAGCACCCAAAAAAATTGAACGGGTATTTCTCAACCCCGAGCAATTACAACGTTATTTACGAGAATATTAT
CAAGTCAGCCGAGCAGTAAACTCAGCTCAAAAAGATGCGGCTCATGACCGTGATAACAAAGGTGTAGAAGCGCTTTTACA
ACTTGGCGATAGCCAAAATCCTGATGCCAATGATCAGCATATTGTGAAATTAGTAGACTGGATTTTGCAATTTGCATTTG
AACAGAGCGCCAGTGACATTCACATGGAACCGCGTAAAGACAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAACATGCCTTCAAATACTCTGACCGCCGTGATTTCTCGAATTAAAATTTTAGGGCGCCTAAATGTAGCAGA
AAAGCGTAAACCACAAGATGGTCGATTAAAAACACGTACACCGAAAGGCCAAGAAACCGAACTACGTTTATCTACCTTAC
CTACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTGTTAGTACGTTCTTTTCAGCAATTGGGTTTT
GACCAGTCTTTATTACAGCAATGGCAGCGTATTACGCAAAATAGTCACGGCATTATTTTAGTTACGGGGCCAACAGGTTC
TGGTAAAACCACAACGCTATATTCTTCTTTAAAACAGCTTGCAACCGAGCAGGTTAATGTCTGTACCATTGAAGATCCGA
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTCAATCATGCAATTGAACTGGGCTTTGCAGATGGTGTACGTGCG
CTTATGCGACAAGACCCAGACATTATTATGATTGGGGAAATTCGTGACCAAGATACTGCGAATATGGCCATTCAAGCTGC
ACTCACAGGCCATTTAGTATTATCAACTTTACACACCAATGATGCGCCGTCTAGTTTGACCCGTTTACATGATTTAGGCA
TACAACCATTTTTAACAGCCGCGACTATTTTAGGTGTATTGGCACAGCGCTTAGTGCGTAAGCTTTGCCCAAACTGCAAA
CAACAAACTCATATTAATGAAGATGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCAGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGCCAGTTAGTCTTG
AGCTTAAGCATCTTATTAGCAGTCATGCGACATTAAATGAATTAAGAAGCCAAACTAAAAAAGAAAGTGTAGAGCCTTTA
AGAATTGCAGGAGCTCGCAAAGTTATTGAAGGTTTGACCACCTTGGAAGAGGTATTGCGGGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)

Type II/IV secretion system protein (T2SSE)

(209-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.5

100

0.379