Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HPELS_RS05795 Genome accession   NC_017063
Coordinates   1222018..1222791 (+) Length   257 a.a.
NCBI ID   WP_000404518.1    Uniprot ID   -
Organism   Helicobacter pylori ELS37     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1217018..1227791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPELS_RS05790 (HPELS_06000) hopL 1218325..1222005 (+) 3681 WP_041201673.1 Hop family outer membrane protein HopL -
  HPELS_RS05795 (HPELS_06005) proC 1222018..1222791 (+) 774 WP_000404518.1 pyrroline-5-carboxylate reductase Machinery gene
  HPELS_RS05800 (HPELS_06010) fic 1222818..1223351 (+) 534 WP_000549892.1 protein adenylyltransferase Fic -
  HPELS_RS05805 (HPELS_06015) ybeY 1223435..1223860 (-) 426 WP_000889533.1 rRNA maturation RNase YbeY -
  HPELS_RS05810 (HPELS_06020) - 1223914..1224408 (-) 495 WP_000516050.1 flavodoxin -
  HPELS_RS05815 (HPELS_06025) - 1224500..1225081 (-) 582 WP_014419619.1 DedA family protein -
  HPELS_RS05820 (HPELS_06030) ccoS 1225205..1225396 (+) 192 WP_001090941.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HPELS_RS05825 (HPELS_06035) - 1225422..1226393 (+) 972 WP_000076637.1 NAD(P)-binding domain-containing protein -
  HPELS_RS05830 (HPELS_06040) - 1226400..1227560 (-) 1161 WP_000944810.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28097.60 Da        Isoelectric Point: 6.9447

>NTDB_id=35307 HPELS_RS05795 WP_000404518.1 1222018..1222791(+) (proC) [Helicobacter pylori ELS37]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKNAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVSFEALSNAIDSLHYLKCMPNIASKFALSSTAVCEKSVAPSISEKALSIIESFGNCVRVGNEEQVD
ASIATNGSALAFLSLVASSLKDAGIREGLNAKDSLELVEMSFKGFAKLLEKERPEVIIEQICTPKGATIEGLSVLEKKGV
RGAFIEACHESVKKMHL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=35307 HPELS_RS05795 WP_000404518.1 1222018..1222791(+) (proC) [Helicobacter pylori ELS37]
ATGGAAATCTTACAGTTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCTCTCATGAGATCTTATCCAAGCG
TTTTATTTTAGAAATCACCGGGAGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCCCAGATCG
TGCCTTACAAAAACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCAAAAGCGTTTTGAGCGCGTTAGCTGGCGTGAGTTTTGAAGCTTTAAGCAATGCGATAGATTCTTT
ACATTACTTAAAATGCATGCCCAATATTGCGAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGCGAAAAATCGGTCGCAC
CTTCAATAAGTGAGAAAGCTTTGAGTATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGTGCGCTCGCTTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGTATTAGAGA
GGGCTTGAACGCTAAAGATTCTTTAGAATTGGTGGAAATGAGTTTTAAAGGCTTTGCCAAGCTTTTAGAAAAAGAACGCC
CAGAGGTGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAGAAGCATGCCATGAAAGCGTGAAAAAAATGCACCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.402

98.833

0.37

Multiple sequence alignment