Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPELS_RS04490 Genome accession   NC_017063
Coordinates   953006..954181 (+) Length   391 a.a.
NCBI ID   WP_000060186.1    Uniprot ID   -
Organism   Helicobacter pylori ELS37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 948006..959181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPELS_RS04465 (HPELS_04610) - 948263..949159 (+) 897 WP_000697532.1 OriC activity response regulator -
  HPELS_RS04470 (HPELS_04615) - 949414..950250 (+) 837 WP_014419585.1 5'-3' exonuclease -
  HPELS_RS04475 (HPELS_04620) - 950345..951595 (-) 1251 WP_001199614.1 hypothetical protein -
  HPELS_RS04480 (HPELS_04625) - 951762..952628 (+) 867 WP_000045781.1 DnaJ family protein -
  HPELS_RS04485 (HPELS_04630) - 952638..953009 (+) 372 WP_000332999.1 heat shock protein transcriptional repressor HspR -
  HPELS_RS04490 (HPELS_04635) rarA 953006..954181 (+) 1176 WP_000060186.1 replication-associated recombination protein A Machinery gene
  HPELS_RS04495 (HPELS_04640) fur 954341..954793 (+) 453 WP_000824993.1 ferric iron uptake transcriptional regulator -
  HPELS_RS04500 (HPELS_04645) - 954814..955311 (-) 498 WP_000780261.1 DUF2147 domain-containing protein -
  HPELS_RS04505 (HPELS_04650) - 955308..955844 (-) 537 WP_000964051.1 YhcH/YjgK/YiaL family protein -
  HPELS_RS04510 (HPELS_04655) fliY 955871..956734 (-) 864 WP_001150675.1 flagellar motor switch protein FliY -
  HPELS_RS04515 (HPELS_04660) fliM 956738..957802 (-) 1065 WP_000763578.1 flagellar motor switch protein FliM -
  HPELS_RS04520 (HPELS_04665) - 957795..958562 (-) 768 WP_000602412.1 RNA polymerase sigma factor FliA -
  HPELS_RS04525 (HPELS_04670) - 958540..958854 (-) 315 WP_001265941.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43897.54 Da        Isoelectric Point: 8.5288

>NTDB_id=35298 HPELS_RS04490 WP_000060186.1 953006..954181(+) (rarA) [Helicobacter pylori ELS37]
MSLTSLLNPKSLEDFIGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKNHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCDK
ALTLLKKQIEPDAKTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPHSKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=35298 HPELS_RS04490 WP_000060186.1 953006..954181(+) (rarA) [Helicobacter pylori ELS37]
ATGAGCCTGACTTCACTTTTAAACCCAAAAAGCCTAGAAGATTTTATAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCTTTTTTCTATGGCCCTCCTGGCGTGGGCAAAACAAGCCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTTGTTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAGCCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
GGAATTTTTACTCCCCATTATGGAAAAAAATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCTTAAAAAAGAGCGATTTAGACAAACTTTGCGATAAG
GCTTTAACATTACTCAAAAAACAAATAGAGCCTGACGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACCTTGCAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCCTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTAGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATTATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCTAAATCCAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATCCCTAAACACCTGCTGCCTCATTCTAA
AGACTATCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-118)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391

Multiple sequence alignment