Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPELS_RS04180 Genome accession   NC_017063
Coordinates   885287..885547 (-) Length   86 a.a.
NCBI ID   WP_000602757.1    Uniprot ID   B5Z817
Organism   Helicobacter pylori ELS37     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 880287..890547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPELS_RS04170 - 881895..883927 (-) 2033 Protein_803 relaxase/mobilization nuclease domain-containing protein -
  HPELS_RS04175 (HPELS_04320) - 884906..885274 (-) 369 Protein_804 DNA transfer protein -
  HPELS_RS04180 (HPELS_04325) comB3 885287..885547 (-) 261 WP_000602757.1 hypothetical protein Machinery gene
  HPELS_RS04185 (HPELS_04330) - 885548..885850 (-) 303 WP_000649851.1 TrbC/VirB2 family protein -
  HPELS_RS08730 (HPELS_04335) - 885840..886901 (-) 1062 WP_014419578.1 toprim domain-containing protein -
  HPELS_RS04195 (HPELS_04340) csd3 886841..888028 (-) 1188 WP_000231073.1 peptidoglycan DD-metalloendopeptidase Csd3 -
  HPELS_RS04200 (HPELS_04345) - 888238..888993 (-) 756 WP_000052862.1 R.Pab1 family restriction endonuclease -
  HPELS_RS04205 (HPELS_04350) - 888980..889972 (-) 993 WP_001048379.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10140.01 Da        Isoelectric Point: 4.6082

>NTDB_id=35296 HPELS_RS04180 WP_000602757.1 885287..885547(-) (comB3) [Helicobacter pylori ELS37]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALVTMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=35296 HPELS_RS04180 WP_000602757.1 885287..885547(-) (comB3) [Helicobacter pylori ELS37]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
CTGGATAATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTATGGTCTTTATTGTATGGCGTGGTGCTATTGGTAGCATTGG
TAACAATGTTTTACATATTAGAATTTTTTGATGAAGATATTACAAACATTATCTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z817

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453