Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GOM46_RS06205 Genome accession   NZ_CP046525
Coordinates   1243422..1245170 (-) Length   582 a.a.
NCBI ID   WP_006149792.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1238422..1250170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS06185 (GOM46_06170) ftsX 1239141..1240067 (-) 927 WP_006149801.1 permease-like cell division protein FtsX -
  GOM46_RS06190 (GOM46_06175) ftsE 1240060..1240752 (-) 693 WP_004251332.1 cell division ATP-binding protein FtsE -
  GOM46_RS06200 (GOM46_06185) - 1242043..1243302 (-) 1260 WP_235083349.1 TRZ/ATZ family protein -
  GOM46_RS06205 (GOM46_06190) rcrQ 1243422..1245170 (-) 1749 WP_006149792.1 ABC transporter ATP-binding protein Regulator
  GOM46_RS06210 (GOM46_06195) - 1245172..1246896 (-) 1725 WP_006149900.1 ABC transporter ATP-binding protein -
  GOM46_RS06215 (GOM46_06200) msrB 1246947..1247885 (-) 939 WP_006149861.1 peptide-methionine (R)-S-oxide reductase MsrB -
  GOM46_RS06220 (GOM46_06205) thrB 1248010..1248879 (-) 870 WP_006149783.1 homoserine kinase -
  GOM46_RS06225 (GOM46_06210) - 1248881..1250167 (-) 1287 WP_006149863.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64503.88 Da        Isoelectric Point: 7.1205

>NTDB_id=352956 GOM46_RS06205 WP_006149792.1 1243422..1245170(-) (rcrQ) [Streptococcus infantis strain SO]
MKGKHASQTLKRLAKDLASHPVLLFLAFLGTIAQVALSIYLPFLIGQVIDQVLVTGSSQIFWQIFLQMILVVIGNTLVQW
ANPLLYNRLIFSYTRDLREKIIDKLHRLPIALVDRQGSGEMVSRVTTDIEQLAAGLNMIFNQFFIGILMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTQLIEESLTQQNIIQSFNAQEEFIERLHEANDNYAGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGALRIMAGSTLTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACAERVYAVL
ESPEVTETGQEVLTSNQVKGAISFNHVSFGYNPEKILIKDLSIDIPAGSKVAIVGPTGAGKSTLINLLMRFYPINSGDIL
LDGHSIYDYTRASLRQQFGMVLQETWLKQGTIHDNIAFGNPGASREQVIAAAKAANADFFIQQLPQGYDTKLENAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFAKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEHGSH
QELMARKGKYYQMQKAAAFSPE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=352956 GOM46_RS06205 WP_006149792.1 1243422..1245170(-) (rcrQ) [Streptococcus infantis strain SO]
ATGAAAGGTAAACATGCAAGTCAAACCCTCAAACGTTTGGCAAAAGATTTAGCAAGTCATCCCGTCCTTCTTTTTCTAGC
TTTCTTGGGAACCATTGCTCAAGTGGCCCTATCAATCTATCTTCCATTCTTGATAGGACAGGTAATTGACCAAGTCTTGG
TGACGGGCTCTTCTCAGATATTCTGGCAGATTTTTCTCCAGATGATATTGGTGGTGATAGGAAATACACTGGTACAATGG
GCCAATCCCCTCCTATACAACCGTCTCATATTTTCCTATACCAGAGATTTACGTGAAAAAATCATCGATAAGCTCCATCG
TCTTCCGATTGCCTTGGTAGACAGACAGGGGAGTGGAGAAATGGTCAGCCGTGTGACGACAGATATCGAGCAGTTAGCAG
CAGGACTGAACATGATATTTAATCAATTTTTCATCGGAATTCTGATGATTTTGGTCAGCATCCTTGCCATGCTGCAGATT
CATCTTTTGATGACTCTCTTGGTCTTGCTCTTAACACCTCTGTCTATGGTTATTTCACGCTTTATTGCCAAGAGATCCTA
CCATCTCTTTCAGAAGCAGACAGAAACGAGGGGGATTCAAACTCAGCTAATCGAAGAATCCCTCACCCAGCAGAACATTA
TCCAGTCCTTCAATGCCCAGGAAGAATTTATCGAGAGACTTCATGAGGCAAATGACAACTACGCAGGTTATTCTCAGTCA
GCTATCTTTTATTCTTCGACAGTCAATCCTTCAACTCGTTTTGTCAATGCCCTCATTTATGCGCTCCTAGCTGGCGTTGG
GGCCTTGCGAATCATGGCAGGTTCTACTTTGACGGTTGGTCGATTGGTAACCTTTTTGAACTATGTGCAGCAGTATACCA
AGCCCTTTAACGATATTTCATCGGTCTTAGCTGAGTTGCAAAGTGCTCTAGCCTGTGCTGAACGTGTTTATGCAGTTTTA
GAAAGCCCTGAGGTTACAGAAACGGGTCAGGAAGTCTTGACTAGCAATCAAGTCAAGGGAGCTATTTCCTTTAATCATGT
CTCCTTTGGCTACAATCCTGAAAAGATCTTAATCAAGGACTTGTCTATTGACATTCCAGCTGGTAGTAAGGTTGCCATCG
TTGGGCCAACGGGTGCAGGGAAGTCCACCCTTATCAATCTCCTCATGCGTTTTTACCCGATTAACTCTGGAGATATTTTA
CTGGATGGTCATTCGATTTATGACTATACCCGAGCTTCTCTTCGACAGCAGTTTGGGATGGTACTTCAAGAAACCTGGCT
CAAGCAAGGAACCATTCATGACAATATTGCTTTTGGAAATCCTGGAGCAAGTCGAGAGCAGGTTATTGCAGCAGCTAAGG
CAGCAAATGCGGACTTCTTTATTCAGCAGTTGCCACAGGGTTATGATACCAAGCTTGAAAATGCAGGTGAATCCTTGTCT
GTCGGTCAGGCTCAGCTCTTAACCATTGCTCGTGTCTTTCTAGCCATTCCTAAGATTCTTATTTTAGATGAAGCAACCTC
ATCCATCGATACCCGTACCGAGGTTCTGGTTCAGGATGCCTTTGCCAAACTCATGAAAGGACGGACAAGCTTTATCATCG
CCCACCGTTTGTCAACCATTCAGGATGCTGATTTGATTCTTGTCTTGGTGGATGGAGATATTGTCGAACATGGTAGCCAT
CAGGAACTCATGGCGAGAAAAGGCAAATACTATCAAATGCAAAAAGCAGCAGCCTTTAGTCCAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(359-507)

ABC transporter transmembrane region (ABC_membrane)

(24-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.805

98.625

0.373

Multiple sequence alignment