Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GOM46_RS02985 Genome accession   NZ_CP046525
Coordinates   594180..594968 (+) Length   262 a.a.
NCBI ID   WP_235083978.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 589180..599968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS02970 (GOM46_02955) murT 589235..590578 (-) 1344 WP_235083975.1 lipid II isoglutaminyl synthase subunit MurT -
  GOM46_RS02975 (GOM46_02960) - 590676..591992 (-) 1317 WP_235083976.1 FAD-containing oxidoreductase -
  GOM46_RS02980 (GOM46_02965) - 592334..593908 (+) 1575 WP_235083977.1 DEAD/DEAH box helicase -
  GOM46_RS02985 (GOM46_02970) codY 594180..594968 (+) 789 WP_235083978.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GOM46_RS02990 (GOM46_02975) - 594968..595543 (+) 576 WP_235083979.1 cysteine hydrolase family protein -
  GOM46_RS03000 (GOM46_02985) - 595839..597116 (+) 1278 WP_235083980.1 ABC transporter permease -
  GOM46_RS03005 (GOM46_02990) vex2 597130..597777 (+) 648 WP_235083981.1 ABC transporter ATP-binding subunit Vex2 -
  GOM46_RS03010 (GOM46_02995) vex3 597823..599202 (+) 1380 WP_235083982.1 ABC transporter permease subunit Vex3 -
  GOM46_RS03015 (GOM46_03000) vncR 599273..599929 (+) 657 WP_235083983.1 response regulator transcription factor VncR -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29701.10 Da        Isoelectric Point: 5.5090

>NTDB_id=352923 GOM46_RS02985 WP_235083978.1 594180..594968(+) (codY) [Streptococcus infantis strain SO]
MANLLEKTRKITSILKRAEEKLQDDLPYNAITRQLADIIDCNACILNSKGRLLGYFMRYKTNNDRVEQFFQSKIFPDEYI
QGANMIYDTEANLPVEHDLTVFPTESRSDFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEEEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASIIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDIFEEVKKRNY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=352923 GOM46_RS02985 WP_235083978.1 594180..594968(+) (codY) [Streptococcus infantis strain SO]
ATGGCAAATTTATTAGAAAAAACAAGAAAAATTACGTCTATCCTGAAGCGTGCGGAAGAAAAGCTTCAAGATGACCTACC
ATACAATGCAATTACACGTCAATTGGCTGATATTATTGACTGTAATGCCTGTATTTTAAATAGTAAGGGACGTCTTCTAG
GATATTTTATGCGCTACAAGACCAATAATGACCGTGTAGAGCAATTTTTCCAATCAAAGATTTTCCCTGATGAATATATT
CAAGGGGCTAACATGATCTACGATACGGAGGCTAACCTCCCGGTGGAGCATGATTTGACCGTTTTCCCAACAGAAAGTCG
TTCAGACTTTCCTGATGGATTGACTACGATTGCTCCGATTCATGTTTCTGGTATCCGCTTGGGTTCTTTGATTATTTGGC
GTAATGACAAGAAATTTGAAGAAGAGGACTTGATCCTTGTTGAGATTGCAAGCACTGTAGTTGGAATTCAATTGTTGAAC
TTCCAACGTGAAGAAGACGAGAAAAATATTCGTCGTCGTACAGCAGTCACTATGGCAGTTAATACCCTTTCTTATTCTGA
ATTGCGAGCAGTATCAGCTATTTTAGGAGAACTAAATGGTAATGAAGGTCAATTGACAGCTTCTATCATTGCAGATCGTA
TCGGTATTACACGTTCGGTGATTGTCAATGCTCTTCGTAAACTCGAATCAGCAGGGATTATTGAAAGTCGTTCTCTTGGT
ATGAAAGGAACTTATCTCAAAGTTCTAATCCCAGATATTTTTGAAGAAGTGAAAAAGAGGAACTATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.214

100

0.622
  codY Bacillus subtilis subsp. subtilis str. 168

49.593

93.893

0.466

Multiple sequence alignment