Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SaO55_RS05040 Genome accession   NZ_CP038268
Coordinates   983611..984597 (+) Length   328 a.a.
NCBI ID   WP_000959275.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O55 isolate B118     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 978611..989597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO55_RS05015 (SaO55_0936) opp4B 978824..979786 (+) 963 WP_000593417.1 oligopeptide ABC transporter permease -
  SaO55_RS05020 (SaO55_0937) opp4C 979798..980679 (+) 882 WP_001180266.1 oligopeptide ABC transporter permease -
  SaO55_RS05025 (SaO55_0938) trpS 980721..981710 (-) 990 WP_000448935.1 tryptophan--tRNA ligase -
  SaO55_RS05030 (SaO55_0939) spxA 982005..982400 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  SaO55_RS05035 (SaO55_0940) mecA 982771..983490 (+) 720 WP_001217727.1 adaptor protein MecA -
  SaO55_RS05040 (SaO55_0941) coiA 983611..984597 (+) 987 WP_000959275.1 competence protein CoiA family protein Machinery gene
  SaO55_RS05045 (SaO55_0942) pepF 984645..986453 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  SaO55_RS05050 (SaO55_0943) yjbH 986913..987719 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  SaO55_RS05055 (SaO55_0944) - 987742..988107 (-) 366 WP_000214066.1 truncated hemoglobin YjbI -
  SaO55_RS05060 (SaO55_0945) - 988211..988804 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  SaO55_RS05065 (SaO55_0946) - 988990..989337 (+) 348 WP_001242107.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38787.39 Da        Isoelectric Point: 9.6529

>NTDB_id=352914 SaO55_RS05040 WP_000959275.1 983611..984597(+) (coiA) [Staphylococcus aureus strain O55 isolate B118]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEAFLKEIKQIPDILINNKYVIELQYLPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=352914 SaO55_RS05040 WP_000959275.1 983611..984597(+) (coiA) [Staphylococcus aureus strain O55 isolate B118]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGGCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTTGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

96.646

100

0.966
  coiA Staphylococcus aureus MW2

96.646

100

0.966

Multiple sequence alignment