Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GOM48_RS02330 Genome accession   NZ_CP046523
Coordinates   475256..477037 (+) Length   593 a.a.
NCBI ID   WP_235098117.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 470256..482037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS02310 (GOM48_02300) metA 470846..471790 (+) 945 WP_235098112.1 homoserine O-acetyltransferase MetA -
  GOM48_RS02315 (GOM48_02305) - 471799..472476 (+) 678 WP_235098114.1 DnaD domain-containing protein -
  GOM48_RS02320 (GOM48_02310) tpiA 472573..473331 (+) 759 WP_000087893.1 triose-phosphate isomerase -
  GOM48_RS02325 (GOM48_02315) - 473511..475247 (+) 1737 WP_235098115.1 ABC transporter ATP-binding protein -
  GOM48_RS02330 (GOM48_02320) rcrQ 475256..477037 (+) 1782 WP_235098117.1 ABC transporter ATP-binding protein Regulator
  GOM48_RS02335 (GOM48_02325) - 477187..477705 (+) 519 WP_000229891.1 Dps family protein -
  GOM48_RS02340 (GOM48_02330) - 477915..478253 (+) 339 WP_001061600.1 zinc ribbon domain-containing protein YjdM -
  GOM48_RS02345 (GOM48_02335) - 478256..478879 (+) 624 WP_000775202.1 Pr6Pr family membrane protein -
  GOM48_RS02350 (GOM48_02340) - 478992..480143 (+) 1152 WP_235098119.1 MFS transporter -
  GOM48_RS02355 (GOM48_02345) truA 480240..480989 (+) 750 WP_235098121.1 tRNA pseudouridine(38-40) synthase TruA -
  GOM48_RS02360 (GOM48_02350) - 480979..481752 (+) 774 WP_235098123.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 66579.00 Da        Isoelectric Point: 5.9823

>NTDB_id=352685 GOM48_RS02330 WP_235098117.1 475256..477037(+) (rcrQ) [Streptococcus oralis strain SOD]
MKTQSSLARLWSYLKAYRFSVFFAVFLKVLSVVMSVLEPFVLGLAITELTKNLLDMAKGLSGAGINTGYIGTVLIIYLFR
GLLYELGSYYSNYFMTNAVQSMTQDLRNEMTEKINRIPVSFFDKHQFGDLLGRFTSDVETVSNALQQSFLQIVNAVLTIV
LVMGMVLYLNFQLAIVVILSIPVTYFGARSILKRSQPYFKEQAAILGRMNGYVQENLTGFNVLKLYGREESSHKEFSKIT
DDLQRVGFKASFISGLMMPALHAVSDLTYLIVAVLGGLQVIAGRLTVGNMQAFVQYVWQVSQPIQNITQLAGQMQSAKSS
LDRIFEILDETEEVKGEELEILEPLTGQVTFQHVDFQYVENKPLIRDFNLEVQPGEMVAIVGPTGAGKTTLINLLMRFYD
VTAGAILVDGQDIRQLSRQDYRRQFGMVLQDAWLYEGTIKENLRFGNLDASDEEIIEAAKAANVDHFIRTLPGGYNMEMN
QESSNISLGQKQLLTIARALLANPKILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLQAKGFYYDLYQSQFSSKSEQVG

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=352685 GOM48_RS02330 WP_235098117.1 475256..477037(+) (rcrQ) [Streptococcus oralis strain SOD]
ATGAAAACACAATCTAGTTTAGCTCGTTTGTGGAGTTATTTAAAAGCTTACCGTTTTTCTGTCTTCTTTGCAGTCTTTCT
AAAAGTTTTGAGTGTGGTCATGAGTGTCTTGGAGCCTTTTGTCTTGGGGCTGGCCATTACGGAGTTGACAAAAAACCTCT
TAGACATGGCTAAGGGCCTTTCAGGTGCTGGTATCAATACTGGCTACATCGGAACTGTTTTAATCATTTACCTCTTTAGA
GGTCTCTTGTATGAACTTGGTTCTTATTATTCCAACTATTTCATGACCAATGCGGTCCAGTCCATGACTCAGGATCTGCG
AAATGAAATGACCGAGAAAATCAATCGTATCCCAGTATCTTTCTTTGACAAACACCAGTTTGGTGATTTATTGGGACGAT
TTACCAGTGACGTTGAGACAGTGTCCAACGCTCTTCAACAGTCTTTCCTACAAATTGTCAATGCTGTTCTAACGATTGTT
CTCGTCATGGGAATGGTTTTATACTTGAACTTTCAACTGGCTATAGTGGTGATTCTATCCATTCCAGTGACCTATTTTGG
TGCCAGAAGCATCCTGAAACGTTCTCAGCCTTATTTTAAAGAGCAGGCGGCTATTTTAGGACGGATGAATGGCTATGTGC
AGGAAAATCTTACAGGTTTTAATGTCTTGAAACTCTACGGTCGTGAGGAATCCTCTCATAAAGAATTTTCTAAGATTACA
GACGACCTCCAACGTGTTGGCTTTAAAGCCAGCTTTATCTCTGGGCTCATGATGCCAGCCCTTCATGCTGTATCGGACTT
GACCTATCTGATCGTTGCAGTTCTTGGTGGTTTGCAAGTGATTGCGGGTCGCTTGACAGTGGGGAATATGCAGGCCTTTG
TTCAGTACGTTTGGCAGGTCAGCCAGCCTATCCAAAACATCACACAACTTGCGGGTCAAATGCAAAGTGCTAAGTCTTCG
CTAGACCGCATCTTCGAGATCTTGGATGAGACAGAGGAAGTCAAGGGAGAAGAACTCGAAATCCTTGAACCCTTAACAGG
TCAGGTGACCTTCCAACATGTTGACTTCCAGTATGTTGAAAACAAACCATTGATTCGAGACTTTAATCTAGAAGTTCAAC
CGGGAGAGATGGTGGCGATTGTTGGTCCTACTGGAGCTGGTAAGACGACCTTGATCAATCTGCTTATGCGCTTTTACGAT
GTCACAGCAGGCGCAATCTTGGTTGACGGGCAGGATATTCGCCAGTTGTCACGTCAAGACTATCGCCGTCAGTTTGGGAT
GGTCTTGCAGGATGCTTGGCTATATGAAGGTACGATCAAAGAAAACCTACGTTTTGGAAATCTTGACGCCAGTGACGAGG
AAATAATAGAAGCTGCCAAAGCAGCAAATGTAGACCACTTTATCCGAACTCTTCCTGGCGGTTACAACATGGAGATGAAC
CAAGAGTCAAGCAATATTTCCCTCGGGCAAAAACAACTTTTGACCATCGCGCGTGCCCTCCTAGCCAATCCTAAAATTCT
CATTCTGGATGAAGCAACTTCCTCTGTTGACACCCGTTTGGAACTCTTGATTCAAAAAGCCATGAAACGCTTGATGAAGG
GAAGAACCAGCTTTGTTATCGCTCACCGTCTCTCTACCATTCAAGAAGCAGACAAGATTCTCGTTCTTAAGGATGGACAG
ATTATTGAGCAGGGAAATCATGAAAGCTTGCTCCAAGCAAAAGGTTTTTATTATGACCTGTATCAAAGCCAATTTTCAAG
TAAATCCGAGCAAGTCGGCTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-303)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.257

99.831

0.442

Multiple sequence alignment