Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   GE024_RS09060 Genome accession   NZ_CP046521
Coordinates   1826144..1828576 (+) Length   810 a.a.
NCBI ID   WP_093999378.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1821144..1833576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS09035 (GE024_09075) - 1822140..1823342 (+) 1203 WP_156667764.1 IS110 family transposase -
  GE024_RS09040 (GE024_09080) - 1823568..1824113 (-) 546 WP_003045194.1 CvpA family protein -
  GE024_RS09045 (GE024_09085) - 1824116..1824424 (-) 309 WP_003045196.1 hypothetical protein -
  GE024_RS09050 (GE024_09090) rnhC 1824571..1825479 (+) 909 WP_093999376.1 ribonuclease HIII -
  GE024_RS09055 (GE024_09095) lepB 1825490..1826083 (+) 594 WP_093999377.1 signal peptidase I -
  GE024_RS09060 (GE024_09100) recD/recD2/recDB 1826144..1828576 (+) 2433 WP_093999378.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GE024_RS09065 (GE024_09105) - 1828666..1829154 (+) 489 WP_093999379.1 hypothetical protein -
  GE024_RS09070 (GE024_09110) dinB 1829246..1830340 (-) 1095 WP_138114301.1 DNA polymerase IV -
  GE024_RS09075 (GE024_09115) pflB 1830549..1832876 (+) 2328 WP_003045209.1 formate C-acetyltransferase -
  GE024_RS09080 (GE024_09120) - 1832999..1833439 (+) 441 WP_093999381.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 91104.84 Da        Isoelectric Point: 4.9094

>NTDB_id=352625 GE024_RS09060 WP_093999378.1 1826144..1828576(+) (recD/recD2/recDB) [Streptococcus canis strain HL_100]
MEYFFTGTVDRIIFENQANFFKILLLTIEDTDSDVDDIDIIITGTMADIMEGEDYTFWGELTQHPKYGQQVKLSRYQKMK
PNSSGLVTYFSSDHFKGIGKKTAEKIIALYGNNTIDHILEDPSKLESISSLSKVNRQAFVAKLKLNYGTEQIIAGLAELG
LSNRFAFQAFDQYKEEAIELIKENPYRLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESINQGDTYVQAR
QLLSVTINLLEDARQVECHPAAVAQQLTSLIEEGNIKNIDTKLFDTSLYFAEEGIAKNIRRLLDQPLDSHLNSEAIQKEI
QALQDKFGITYDQVQQEAIEKALTSKVFLLTGGPGTGKTTVIRGILQAYAKLYQLDLDKKDLPILLAAPTGRAARRMNEL
TGLPSATIHRHLGLTGDNDYQTIEDYLDCDLLIVDEFSMVDTWLANQLLSAVSSTTQVIIVGDSDQLPSVGPGQVLADLL
KVKNLPQIALRKIFRQSQESTIVALADQMRRGILAPDFREKKADRSYFEAQAAFIPDMIQKIVLSAIKSGIPAEEIQILA
PMYKGQAGINHLNQLMQELLNPLEEQTEFLFNDTRFRKGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELVIA
FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNLIYTAITRSKSKLIMLGELAAFDYAIHNEG
IKRQTYLVERFQEQEPEEKTQTNQTQADLEKPANHLNGQVISRSKAHSTKASLTKQQQPLCVLTPDNFLTIDPMIGITED
DICHFFQKNP

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=352625 GE024_RS09060 WP_093999378.1 1826144..1828576(+) (recD/recD2/recDB) [Streptococcus canis strain HL_100]
ATGGAATACTTTTTCACAGGTACTGTTGACCGTATTATCTTTGAAAACCAAGCTAATTTTTTCAAAATTCTTCTCCTTAC
AATCGAGGATACTGACAGTGATGTGGATGATATAGACATCATTATCACTGGAACCATGGCTGACATTATGGAAGGGGAAG
ATTATACCTTTTGGGGAGAATTAACCCAGCATCCTAAGTATGGTCAACAAGTCAAGCTGAGCCGTTATCAAAAAATGAAA
CCCAATTCCTCTGGTTTAGTGACTTATTTTTCTAGTGACCATTTCAAGGGGATTGGGAAAAAAACAGCTGAAAAGATTAT
TGCTCTCTATGGCAATAACACCATTGACCATATTTTAGAAGACCCCAGTAAACTGGAAAGCATTTCTAGCCTGTCCAAGG
TCAACCGCCAAGCCTTTGTTGCCAAACTCAAATTAAATTATGGTACCGAACAAATTATTGCTGGCTTAGCAGAGTTAGGC
TTAAGCAACCGTTTTGCCTTTCAAGCCTTTGACCAATACAAGGAAGAAGCCATTGAGCTGATTAAGGAAAATCCTTACCG
GCTAGTCGAAGACCTTCAAGGTTTTGGGTTTAAAATGGCTGATGCCCTAGCTGAAAACTTAGGAATTGAAAGCGACTCTC
CTAAACGTTTTCGGGCAGCTCTTTTGCATTGTCTCTTGGAAGAATCAATCAACCAAGGAGATACTTACGTTCAAGCACGC
CAATTACTATCTGTTACCATTAATCTCTTAGAAGATGCCCGTCAAGTAGAATGTCATCCAGCTGCTGTTGCCCAACAATT
AACCTCCTTGATTGAAGAGGGCAATATAAAAAATATTGACACCAAGCTTTTTGATACCAGCCTTTACTTTGCTGAGGAAG
GAATTGCCAAAAATATCAGAAGACTTTTAGACCAACCTCTGGACAGTCACCTTAACTCTGAGGCTATCCAGAAAGAAATT
CAAGCCCTTCAAGATAAATTCGGCATCACCTATGATCAGGTCCAACAAGAAGCTATTGAGAAGGCTTTGACCAGCAAAGT
ATTTCTACTAACAGGGGGACCAGGTACTGGAAAAACCACTGTTATTCGAGGAATCTTGCAAGCCTATGCCAAGCTTTACC
AGCTTGACCTTGACAAAAAAGATCTTCCTATTTTATTAGCAGCCCCAACAGGGCGAGCAGCTCGGCGGATGAATGAGCTG
ACCGGACTTCCTAGTGCTACTATCCATAGACACCTCGGTTTAACTGGCGATAATGACTATCAGACCATAGAAGACTATTT
GGATTGTGATTTGCTGATTGTGGATGAATTCTCCATGGTTGATACTTGGCTTGCCAATCAACTGCTATCTGCTGTCAGCT
CGACCACTCAGGTCATTATTGTGGGCGATAGTGACCAGCTGCCTTCTGTCGGCCCTGGGCAAGTGTTGGCAGATCTTTTA
AAGGTCAAAAATCTCCCACAAATTGCCCTAAGGAAAATCTTTCGCCAATCTCAAGAATCAACCATTGTAGCGTTGGCAGA
TCAGATGCGTCGTGGTATTTTAGCTCCAGATTTTAGAGAAAAAAAGGCTGATCGTTCTTATTTTGAAGCACAAGCAGCCT
TTATCCCTGACATGATTCAAAAAATTGTGCTTTCTGCTATCAAAAGCGGTATTCCTGCTGAAGAAATTCAAATTTTAGCC
CCTATGTATAAAGGACAGGCTGGCATCAATCATCTCAATCAACTAATGCAAGAGCTCCTCAATCCCTTAGAAGAGCAGAC
AGAATTTCTGTTCAACGACACCCGCTTCCGTAAGGGGGATAAGGTTTTGCACTTGGTCAATGATGCTCAACTCAATGTCT
TTAATGGCGATATTGGTTATATCACTGACTTGATTCCAGCCAAATACACTGAATCCAAGCAGGACGAATTAGTTATAGCA
TTTGACGGCAGCGAAGTAACTTATCCTCGAAATGAATGGCTTAAATTAACCCTTGCCTATGCCATGAGCATTCATAAGTC
GCAAGGTAGTGAATTTCAGGTTGTTATTTTGCCAATCACCCGTCAAAGTGGACGACTGCTGCAACGCAATCTTATTTACA
CAGCTATCACACGTTCCAAAAGCAAACTCATTATGCTAGGAGAATTGGCCGCTTTTGATTATGCCATTCACAATGAGGGC
ATCAAGCGACAAACTTATTTGGTGGAACGCTTCCAAGAGCAAGAACCTGAAGAAAAAACTCAGACCAACCAAACACAAGC
TGACCTCGAAAAACCTGCAAATCACTTAAATGGTCAAGTAATCAGTCGTTCAAAAGCACATTCAACCAAGGCTAGCCTGA
CTAAGCAACAGCAGCCCCTTTGTGTCTTAACTCCTGATAATTTTCTTACCATTGATCCGATGATAGGGATTACAGAAGAC
GACATCTGCCACTTTTTTCAGAAAAATCCCTAA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

AAA domain (AAA_30)

(331-525)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.524

93.951

0.39

Multiple sequence alignment