Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GE024_RS08815 Genome accession   NZ_CP046521
Coordinates   1764560..1765342 (-) Length   260 a.a.
NCBI ID   WP_093998813.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759560..1770342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS08795 (GE024_08835) - 1761351..1762190 (-) 840 WP_093998810.1 pyruvate, water dikinase regulatory protein -
  GE024_RS08800 (GE024_08840) - 1762211..1762804 (-) 594 WP_307761777.1 helix-turn-helix transcriptional regulator -
  GE024_RS08805 (GE024_08845) - 1763268..1763579 (-) 312 WP_003045089.1 rhodanese-like domain-containing protein -
  GE024_RS08810 (GE024_08850) - 1763882..1764433 (-) 552 WP_003045093.1 cysteine hydrolase family protein -
  GE024_RS08815 (GE024_08855) codY 1764560..1765342 (-) 783 WP_093998813.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GE024_RS08820 (GE024_08860) - 1765596..1766810 (-) 1215 WP_093998814.1 pyridoxal phosphate-dependent aminotransferase -
  GE024_RS08825 (GE024_08865) - 1767138..1767590 (+) 453 WP_093998815.1 universal stress protein -
  GE024_RS08830 (GE024_08870) - 1767925..1769313 (-) 1389 WP_093998816.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28773.91 Da        Isoelectric Point: 4.4626

>NTDB_id=352619 GE024_RS08815 WP_093998813.1 1764560..1765342(-) (codY) [Streptococcus canis strain HL_100]
MPNLLEKTRKITSILQRSVDSLETELPYNAMASRLADIIDCNACIINGGGTLLGYAMKYRTNTDRVEEFFEAKQFPDTYV
KAASRVYDTEANLSVENELTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDNEFSDDDLILVEISSTVVGIQLLN
LQTENLEETIRKQTAINMAINTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEF

Nucleotide


Download         Length: 783 bp        

>NTDB_id=352619 GE024_RS08815 WP_093998813.1 1764560..1765342(-) (codY) [Streptococcus canis strain HL_100]
ATGCCTAACTTATTAGAAAAAACTCGTAAAATTACGTCTATTCTGCAGCGTTCCGTAGATAGCTTGGAGACAGAACTCCC
ATACAATGCCATGGCATCTCGCTTAGCAGATATTATTGACTGTAATGCTTGCATTATTAACGGTGGCGGAACCCTACTTG
GTTATGCCATGAAATATAGAACCAACACTGACCGTGTGGAAGAATTTTTTGAAGCAAAACAATTTCCAGATACTTATGTA
AAGGCGGCTAGTCGAGTTTACGACACGGAAGCCAATCTTTCAGTTGAAAATGAATTAACCATTTTCCCAGTAGAATCTAA
GGACATTTACCCTGATGGCTTGACCACCATTGCCCCAATTTACGGTGGTGGGATGCGTCTTGGTTCTCTGATTATCTGGC
GAAATGACAATGAGTTTAGCGATGATGATTTGATTTTGGTGGAAATTTCAAGCACTGTTGTAGGGATTCAATTATTGAAC
CTTCAAACAGAAAACTTGGAAGAGACCATCCGTAAACAAACGGCTATCAATATGGCTATTAATACCTTATCTTATTCCGA
AATGAAAGCTGTCGCAGCTATTCTGGGAGAATTAGATGGTAACGAAGGTCGCTTAACCGCTTCTGTTATTGCTGACCGTA
TTGGCATTACCCGTTCTGTTATCGTCAATGCCCTTCGTAAATTAGAAAGTGCTGGGATTATTGAGAGCCGTTCGCTTGGA
ATGAAGGGAACCTATCTCAAAGTTATCAACGAAGGTATTTTTGATAAATTAAAAGAATTTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.926

98.846

0.662
  codY Bacillus subtilis subsp. subtilis str. 168

52.632

95

0.5