Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GFX43_RS17115 Genome accession   NZ_CP046448
Coordinates   3324104..3325918 (-) Length   604 a.a.
NCBI ID   WP_015383126.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3319104..3330918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS17090 (GFX43_017090) lnrL 3319613..3320548 (-) 936 WP_015383130.1 linearmycin resistance ATP-binding protein LnrL -
  GFX43_RS17095 (GFX43_017095) lnrK 3320692..3321354 (-) 663 WP_015383129.1 two-component system response regulator LnrK -
  GFX43_RS17100 (GFX43_017100) - 3321351..3322553 (-) 1203 WP_041517763.1 sensor histidine kinase -
  GFX43_RS17105 (GFX43_017105) catE 3322671..3323528 (-) 858 WP_015383127.1 catechol 2,3-dioxygenase -
  GFX43_RS17110 (GFX43_017110) catD 3323546..3323950 (-) 405 WP_015252533.1 DoxX family oxidoreductase CatD -
  GFX43_RS17115 (GFX43_017115) rcrQ 3324104..3325918 (-) 1815 WP_015383126.1 ABC transporter ATP-binding protein Regulator
  GFX43_RS17120 (GFX43_017120) yfiB 3325912..3327633 (-) 1722 WP_015383125.1 ABC transporter ATP-binding protein -
  GFX43_RS17125 (GFX43_017125) malP 3327739..3329322 (-) 1584 WP_015383124.1 PTS maltose transporter subunit IIBC -
  GFX43_RS17130 (GFX43_017130) glvR 3329337..3330101 (-) 765 WP_015482966.1 MurR/RpiR family transcriptional regulator GlvR -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67365.14 Da        Isoelectric Point: 9.7252

>NTDB_id=352435 GFX43_RS17115 WP_015383126.1 3324104..3325918(-) (rcrQ) [Bacillus subtilis strain ZD01]
MLKDIRKPFQYPKLPIDKKESAKKRAKAKDTKGTLRRIWSYLAERKGLLILVMLMVVISAIFGLLGPFVIGKAIDHFIVG
KTVSGLIPVLLLLLAIYIIQSLSLWFQNYWMITISQGTVFRMRSELFTHLHELPIPFFDKQRHGELMSRVTNDIENVSST
LNTSVIQILSSVITFVGTIAVMLYMSPLLTLITLTIIPVMAASLKWITNRTGKLFKEQQKNLGDLNGYIEESVSGAKVIK
AYSREKQITAEFLEKNAALKTSGFWAQTISGFIPKVMNSLNNLSFTMIAAIGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEKNAVHQPIQTGSIEFRDVSFGYDKGQQTLKHLQFTVPAGQSIAFVGP
TGAGKTTVTNLLARFYEPNEGKILIDGTDIKTLTRASLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKTAN
AHSFIERLPKGYDTVLTQNGSGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVNIQEALARLMEGRTSVIIAHR
LNTIQRADQIVVLKDGEMIEKGSHDELIRQKGFYSDLSESQFEK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=352435 GFX43_RS17115 WP_015383126.1 3324104..3325918(-) (rcrQ) [Bacillus subtilis strain ZD01]
ATGCTAAAAGACATCCGCAAGCCTTTCCAATATCCCAAACTGCCAATTGACAAAAAAGAAAGCGCGAAAAAGCGGGCGAA
AGCAAAGGATACAAAGGGCACACTGAGACGAATCTGGTCTTACTTGGCTGAAAGAAAAGGACTGCTCATCCTTGTCATGC
TGATGGTTGTCATCAGCGCCATATTCGGGCTCCTTGGCCCCTTTGTGATCGGAAAGGCCATCGACCATTTTATCGTCGGG
AAAACGGTCAGCGGCTTGATTCCCGTTTTGCTTCTTCTGCTTGCTATCTATATCATTCAGTCCCTGTCGCTTTGGTTTCA
AAACTATTGGATGATTACGATCTCGCAGGGCACGGTTTTCAGAATGAGAAGCGAATTGTTCACCCATCTGCATGAGCTGC
CGATTCCATTTTTTGATAAACAGCGGCACGGCGAGCTGATGAGCCGGGTGACGAATGACATCGAAAATGTCAGTTCTACC
TTAAACACGTCAGTCATTCAAATTTTGTCAAGCGTGATCACCTTTGTCGGGACGATTGCGGTGATGCTGTACATGAGCCC
GCTCCTTACATTGATTACGCTGACCATTATTCCGGTGATGGCAGCGAGCCTGAAATGGATCACCAACCGAACGGGAAAGC
TGTTTAAAGAACAGCAGAAAAACCTTGGTGATCTGAATGGGTATATTGAGGAATCTGTTTCAGGCGCAAAGGTCATCAAA
GCATATTCACGTGAGAAGCAGATTACTGCTGAATTTCTCGAAAAAAACGCTGCACTCAAGACGTCGGGCTTTTGGGCGCA
GACGATTTCCGGGTTTATCCCGAAGGTCATGAACTCTTTGAATAACTTAAGTTTTACAATGATAGCGGCAATCGGCGGTT
TGTTTGCGCTGAAAGGCTGGATCTCGATCGGCTCCATCGTCGTCTTTGCCGAGTATTCAAGGCAATTTACACGCCCTTTA
AACGATCTGGCCAACCAGTTTAATACGATGCTGTCCGCAATCGCCGGCGCTGAACGGGTGTTTGACGTGCTTGATGAAAA
AGAAGAGCGCGAGGATGAAAAGAACGCCGTGCATCAGCCCATCCAAACAGGCAGCATTGAATTCCGGGATGTGTCCTTCG
GTTACGATAAAGGGCAGCAGACACTGAAGCATTTACAGTTTACCGTGCCTGCGGGGCAGTCCATTGCGTTTGTCGGACCG
ACGGGGGCGGGGAAGACAACCGTCACCAACCTGCTCGCCCGTTTTTACGAGCCTAACGAAGGAAAAATTTTAATCGACGG
TACAGATATTAAAACCCTTACTAGAGCGAGCCTGAGAAAAAACATGGGGTTTGTTCTTCAGGATTCTTTCTTATTTCAGG
GAACGATCAGAGAAAACATTCGCTACGGCAGGCTTGATGCTTCTGATCAGGAAGTCGAAGCCGCTGCAAAAACAGCGAAT
GCCCATAGTTTTATTGAAAGGCTGCCAAAAGGGTATGACACCGTGCTGACGCAAAACGGTTCGGGCATCAGTCAAGGACA
GAAGCAGTTGATTTCTATAGCGAGGGCGGTGCTTGCCGATCCGGTTCTTCTCATTTTGGATGAAGCGACAAGCAACATTG
ATACCGTTACAGAAGTCAACATTCAAGAAGCGCTCGCCCGTTTAATGGAAGGAAGAACAAGCGTCATCATTGCCCACAGG
CTGAACACCATTCAAAGAGCGGACCAGATTGTGGTGCTTAAAGACGGTGAAATGATTGAAAAAGGCAGCCATGACGAGCT
GATTCGGCAAAAAGGATTTTACAGTGACTTATCTGAAAGCCAATTTGAGAAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(382-531)

ABC transporter transmembrane region (ABC_membrane)

(49-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.31

96.026

0.377