Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GFX43_RS15375 Genome accession   NZ_CP046448
Coordinates   2998917..2999834 (-) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain ZD01     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2993917..3004834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS15350 (GFX43_015350) spx 2994279..2994674 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  GFX43_RS15355 (GFX43_015355) yjbC 2994855..2995430 (-) 576 WP_015383352.1 GNAT family N-acetyltransferase -
  GFX43_RS15360 (GFX43_015360) yjbB 2995594..2996811 (-) 1218 WP_080030656.1 MFS transporter -
  GFX43_RS15365 (GFX43_015365) oppF 2996917..2997834 (-) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  GFX43_RS15370 (GFX43_015370) oppD 2997836..2998912 (-) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  GFX43_RS15375 (GFX43_015375) amiD 2998917..2999834 (-) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  GFX43_RS15380 (GFX43_015380) oppB 2999838..3000773 (-) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  GFX43_RS15385 (GFX43_015385) oppA 3000881..3002518 (-) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  GFX43_RS15390 (GFX43_015390) trpS 3003262..3004254 (+) 993 WP_015483084.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=352417 GFX43_RS15375 WP_003232954.1 2998917..2999834(-) (amiD) [Bacillus subtilis strain ZD01]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=352417 GFX43_RS15375 WP_003232954.1 2998917..2999834(-) (amiD) [Bacillus subtilis strain ZD01]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364