Detailed information NTG0352359

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: GFX43_RS08170
• Genome accession: NZ_CP046448
• Coordinates: 1598229..1599494 (-)
• Length: 421 a.a.
• NCBI ID: WP_015483504.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain ZD01
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1593229..1604494

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GFX43_RS08145 (GFX43_008145)	yrzK	1593472..1593642 (+)	171	WP_004399157.1	YrzK family protein	-
GFX43_RS08150 (GFX43_008150)	hisS	1594023..1595297 (+)	1275	WP_015384242.1	histidine--tRNA ligase	-
GFX43_RS08155 (GFX43_008155)	aspS	1595311..1597089 (+)	1779	WP_015384241.1	aspartate--tRNA ligase	-
GFX43_RS08165 (GFX43_008165)	tcdA	1597425..1598189 (+)	765	WP_015384240.1	tRNA threonylcarbamoyladenosine dehydratase	-
GFX43_RS08170 (GFX43_008170)	rarA	1598229..1599494 (-)	1266	WP_015483504.1	replication-associated recombination protein A	Machinery gene
GFX43_RS08175 (GFX43_008175)	cymR	1599697..1600113 (+)	417	WP_003225879.1	cysteine metabolism transcriptional regulator CymR	-
GFX43_RS08180 (GFX43_008180)	iscSA	1600132..1601274 (+)	1143	WP_015384237.1	cysteine desulfurase family protein	-
GFX43_RS08185 (GFX43_008185)	mnmA	1601302..1602417 (+)	1116	WP_015483502.1	tRNA 2-thiouridine(34) synthase MnmA	-
GFX43_RS08190 (GFX43_008190)	yrrB	1602503..1603123 (+)	621	WP_206697897.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 46486.28 Da
• Isoelectric Point: 7.0446

>NTDB_id=352359 GFX43_RS08170 WP_015483504.1 1598229..1599494(-) (rarA) [Bacillus subtilis strain ZD01]
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
IVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALER
ALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAV
IELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHYKGAQELGRGIDYKYPHNYDNGWVEQQYLPDPLKNKQYYKP
KQTGKFESALKQVYDNLMKRK

Nucleotide

• Length: 1266 bp

>NTDB_id=352359 GFX43_RS08170 WP_015483504.1 1598229..1599494(-) (rarA) [Bacillus subtilis strain ZD01]
ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTATCGGCCAGCAGCATCTGGTGGCTGAAGATAA
AATTATTGGCAGAATGGTCCAGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTGGAAAAACATCAA
TCGCAACAGCAATCGCCGGTTCAACAAGTATTGCTTTTCGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAA
ATTGTAGCCCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAGTCCACAGGCTGGATAAAGGAAAACA
GGATTTTCTATTACCCTATTTGGAAAACGGGATGATCATTTTGATCGGAGCAACCACAGCTAACCCGTATCATGCCATTA
ATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAGCCGTTAACACCCGATCTGATTAAACAGGCACTGGAACGT
GCGCTCCATGATGAACATCGGGGCCTTGGCACCTATTCTGTATCCATTGATGATCAGGCGATGGAGCATTTCGCCCACGG
ATGCGGAGGAGATGTCCGCTCCGCTTTAAATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAGACGGTGAAA
TTCACATTACATTAGAAACCGCGGAAGAATGCTTGCAGAAAAAAAGCTTTTCTCACGATAAAGATGGTGACGCGCATTAT
GATGTACTGTCCGCTTTTCAAAAATCGATACGTGGCTCTGATGCCAACGCTGCTCTCCACTATTTGGCTAGATTAATTGA
AGCCGGTGATCTGGAGAGCATCGCAAGACGATTGCTTGTTATCGCCTATGAAGATATCGGTTTAGCAAGCCCGCAAGCCG
GCCCTAGAGTGCTGAACGCTATTCAGACCGCTGAGCGAGTCGGGTTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTT
ATTGAGCTTTGCCTCTCACCGAAATCAAACTCTGCCATTCTGGCAATCGATGAGGCCCTGGCAGATATCAGAGCCGGAAA
AATTGGTGATGTCCCGAAGCATTTAAAAGACGCGCATTATAAAGGGGCTCAGGAATTAGGAAGAGGAATCGACTATAAAT
ACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCG
AAACAGACAGGAAAATTCGAATCCGCCTTAAAGCAGGTGTACGATAATTTAATGAAAAGAAAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-416)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	99.525	100	0.995