Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GNT61_RS25165 Genome accession   NZ_CP046405
Coordinates   5405828..5406253 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain SE5443     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5400828..5411253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNT61_RS25150 (GNT61_25155) pilX 5401398..5401985 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  GNT61_RS25155 (GNT61_25160) pilY1 5401997..5405482 (+) 3486 WP_034003229.1 type 4a pilus biogenesis protein PilY1 -
  GNT61_RS25160 (GNT61_25165) pilY2 5405484..5405831 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  GNT61_RS25165 (GNT61_25170) comF 5405828..5406253 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  GNT61_RS25170 (GNT61_25175) ispH 5406300..5407244 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GNT61_RS25175 (GNT61_25180) fkpB 5407330..5407770 (-) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  GNT61_RS25180 (GNT61_25185) lspA 5407763..5408272 (-) 510 WP_003102615.1 signal peptidase II -
  GNT61_RS25185 (GNT61_25190) ileS 5408265..5411096 (-) 2832 WP_023103515.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=352007 GNT61_RS25165 WP_003094721.1 5405828..5406253(+) (comF) [Pseudomonas aeruginosa strain SE5443]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=352007 GNT61_RS25165 WP_003094721.1 5405828..5406253(+) (comF) [Pseudomonas aeruginosa strain SE5443]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383