Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GNT55_RS29365 Genome accession   NZ_CP046404
Coordinates   6236109..6236705 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain SE5416     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6231109..6241705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNT55_RS29340 (GNT55_29330) - 6233252..6234400 (+) 1149 WP_179063325.1 hypothetical protein -
  GNT55_RS29345 (GNT55_29335) - 6234397..6234684 (+) 288 WP_010791802.1 hypothetical protein -
  GNT55_RS29350 (GNT55_29340) - 6234758..6234982 (+) 225 WP_003121473.1 hypothetical protein -
  GNT55_RS29355 (GNT55_29345) pilP 6235070..6235492 (-) 423 Protein_5831 type 4a pilus biogenesis lipoprotein PilP -
  GNT55_RS29360 (GNT55_29350) pilO 6235489..6236112 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  GNT55_RS29365 (GNT55_29355) pilN 6236109..6236705 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  GNT55_RS29370 (GNT55_29360) pilM 6236705..6237769 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  GNT55_RS29375 (GNT55_29365) - 6237954..6240425 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=351912 GNT55_RS29365 WP_003095839.1 6236109..6236705(-) (pilN) [Pseudomonas aeruginosa strain SE5416]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=351912 GNT55_RS29365 WP_003095839.1 6236109..6236705(-) (pilN) [Pseudomonas aeruginosa strain SE5416]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATTGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369