Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   E3U39_RS00695 Genome accession   NZ_CP038028
Coordinates   192165..192944 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 187165..197944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS00665 (E3U39_00665) fliH 187209..187964 (-) 756 WP_053573438.1 flagellar assembly protein FliH -
  E3U39_RS00670 (E3U39_00670) fliG 187957..188973 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  E3U39_RS00675 (E3U39_00675) fliF 188986..190596 (-) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  E3U39_RS00680 (E3U39_00680) fliE 190639..190959 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  E3U39_RS00685 (E3U39_00685) flgC 190970..191422 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  E3U39_RS00690 (E3U39_00690) flgB 191422..191811 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  E3U39_RS00695 (E3U39_00695) codY 192165..192944 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  E3U39_RS00700 (E3U39_00700) hslU 192982..194394 (-) 1413 WP_256052823.1 HslU--HslV peptidase ATPase subunit -
  E3U39_RS00705 (E3U39_00705) hslV 194402..194947 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  E3U39_RS00710 (E3U39_00710) xerC 194963..195880 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  E3U39_RS00715 (E3U39_00715) trmFO 195950..197257 (-) 1308 WP_032871468.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=351555 E3U39_RS00695 WP_003154263.1 192165..192944(-) (codY) [Bacillus amyloliquefaciens strain FS1092]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=351555 E3U39_RS00695 WP_003154263.1 192165..192944(-) (codY) [Bacillus amyloliquefaciens strain FS1092]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment