Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   E3H47_RS12670 Genome accession   NZ_CP038022
Coordinates   2687911..2688354 (-) Length   147 a.a.
NCBI ID   WP_034669853.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain DD78     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2682911..2693354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS12640 (E3H47_12645) - 2683480..2684466 (+) 987 WP_138000896.1 triacylglycerol lipase -
  E3H47_RS12645 (E3H47_12650) - 2684568..2685539 (+) 972 WP_138000897.1 triacylglycerol lipase -
  E3H47_RS12650 (E3H47_12655) rplS 2685599..2685973 (-) 375 WP_005024307.1 50S ribosomal protein L19 -
  E3H47_RS12655 (E3H47_12660) trmD 2686148..2686897 (-) 750 WP_138000898.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  E3H47_RS12660 (E3H47_12665) rimM 2686941..2687489 (-) 549 WP_005404607.1 ribosome maturation factor RimM -
  E3H47_RS12665 (E3H47_12670) rpsP 2687510..2687767 (-) 258 WP_005018185.1 30S ribosomal protein S16 -
  E3H47_RS12670 (E3H47_12675) pilE 2687911..2688354 (-) 444 WP_034669853.1 type IV pilin protein Machinery gene
  E3H47_RS12675 (E3H47_12680) - 2688341..2688826 (-) 486 WP_372410829.1 type IV pilin protein -
  E3H47_RS12680 (E3H47_12685) - 2688891..2692811 (-) 3921 WP_138000989.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15934.17 Da        Isoelectric Point: 9.6271

>NTDB_id=351513 E3H47_RS12670 WP_034669853.1 2687911..2688354(-) (pilE) [Acinetobacter radioresistens strain DD78]
MKVGKYNGFTLIEVMIVVAIIGILAAIAYPSYSQYIIRTKRTDAQSEMLQVAQRMQTYRAANNTFAGATINTVYGSSVIP
KQGTALYNLTFSPSPTTANEWTLIATPISSTSQANDGVICLNHQGQKFWVKGASACALSNTSNWDGR

Nucleotide


Download         Length: 444 bp        

>NTDB_id=351513 E3H47_RS12670 WP_034669853.1 2687911..2688354(-) (pilE) [Acinetobacter radioresistens strain DD78]
ATGAAAGTTGGTAAATATAATGGTTTTACGCTTATAGAAGTTATGATTGTAGTAGCTATTATTGGAATTTTAGCAGCGAT
TGCCTATCCTTCTTATAGCCAATATATTATAAGAACCAAACGTACAGATGCACAAAGTGAAATGTTGCAAGTTGCACAGC
GTATGCAAACCTATAGGGCAGCTAATAATACGTTCGCTGGTGCTACAATAAATACAGTTTATGGAAGCAGCGTGATCCCG
AAACAGGGAACAGCGCTTTATAACTTAACTTTTAGTCCCTCCCCGACCACAGCAAATGAATGGACATTAATAGCGACACC
AATTAGCAGCACATCTCAGGCTAATGATGGGGTTATTTGTCTGAATCACCAAGGCCAAAAATTCTGGGTCAAAGGTGCCA
GTGCCTGTGCCTTATCTAATACCTCTAACTGGGACGGCCGCTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(30-120)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

59.574

95.918

0.571
  comF Acinetobacter baylyi ADP1

53.901

95.918

0.517

Multiple sequence alignment